Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 >seq3 Length=15630833 Score = 147 bits (162), Expect = 5e-30 Identities = 148/190 (78%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || |||||||||||||||||| |||||||||| |||| Sbjct 4184588 CAAGACCCTCACCGGAAAGACCATCACTTTGGAAGTGGAAGCTTCTGACACAATCGAGAA 4184647 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||||| ||||| || || ||||| || || || ||||| |||| Sbjct 4184648 TGTCAAAGC-CAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGACTCATCT 4184706 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||||||| |||| |||||||| ||| | | || |||||| ||||||| |||| Sbjct 4184707 TCGCCGGAAAGCAGCTGGAGGATGGAAGAACTCTTTCGGACTACAACATCCAGAAGGAGT 4184766 Query 206363 CTACTCTTCA 206372 | ||||| || Sbjct 4184767 CCACTCTCCA 4184776 Score = 138 bits (152), Expect = 3e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || |||||| | || || ||| ||||||| Sbjct 4185079 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCTGAC 4185138 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||||||||| || || |||||| || ||| || Sbjct 4185139 ACCATCGAGAATGTCAAAGCCAA-GATTCAAGACAAGGAGGGAATTCCACCAGACCAGCA 4185197 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||| ||||||||||||||||| | || |||||| | ||| | ||||||||||| | Sbjct 4185198 GAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAACAT 4185257 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||| ||||||||||| || || ||| Sbjct 4185258 CCAGAAGGAGTCTACTCTCCATCTCGTT 4185285 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || |||||| | || || ||| ||||||| Sbjct 4185535 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCTGAC 4185594 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||| || || || |||||||| || ||| ||| Sbjct 4185595 ACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAACAA 4185654 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||||||||| ||||| ||||||||||| || ||| || | ||||||||| || Sbjct 4185655 AGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAACATC 4185714 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || || || ||||| Sbjct 4185715 CAAAAGGAGTCGACGCTCCATCTTGT 4185740 Score = 132 bits (146), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || ||||| || |||||||||||||| ||| ||| ||| Sbjct 4185307 CAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCGGAC 4185366 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || ||||| || |||||||| ||| || || Sbjct 4185367 ACCATTGAGAATGTCAAAGCCAAA-ATCCAAGACAAGGAAGGAATCCCGCCAGATCAGCA 4185425 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | |||||||| ||||||||| | || |||||| | || ||| |||| |||||| | Sbjct 4185426 ACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTACAACAT 4185485 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||| ||||| ||||| ||| Sbjct 4185486 CCAGAAGGAGTCCACTCTCCAC 4185507 Score = 125 bits (138), Expect = 2e-23 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||||| | ||||||||||| ||||| |||| ||||| ||| || || |||| Sbjct 4183621 CAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCCGATACCATCGAGAA 4183680 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || ||||| || |||||||| || ||| || ||||| |||| Sbjct 4183681 TGTCAAAGCCAAA-ATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAGAGACTCATCT 4183739 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||||||| | || || ||||| ||| | | || |||||| ||||||| |||| Sbjct 4183740 TCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAACATCCAGAAGGAGT 4183799 Query 206363 CTACTCTTCAC 206373 | ||||| ||| Sbjct 4183800 CCACTCTCCAC 4183810 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||| | || || ||| || ||||| | ||| Sbjct 4184361 AAAACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAGCCTCGGACACTATTGAAAAC 4184420 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || || |||||| | ||||| Sbjct 4184421 GTCAAAGCCAA-GATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAAAGATTGATCTT 4184479 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | || ||||| | || | | || |||||| ||||||| ||||| Sbjct 4184480 CGCCGGGAAGCAGCTTGAGGATGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAGTC 4184539 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||| ||| | | ||||| Sbjct 4184540 TACTCTTCACCTCGTTCTTCGTCTTCG 4184566 Score = 111 bits (122), Expect = 4e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||||||||| || || ||| || || | || Sbjct 4183849 CAAGACACTCACTGGAAAGACCATCACTTTGGAGGTCGAGGCTTCCGATACCATTGAGAA 4183908 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || || ||||| || || || ||||| ||||| Sbjct 4183909 TGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGACTCATCTT 4183968 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || |||||| | || | | || |||||| ||||||| || || Sbjct 4183969 CGCCGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAACATCCAGAAGGAATC 4184028 Query 206364 TACTCTTCACCTTGTT 206379 ||||||||| | ||| Sbjct 4184029 GACTCTTCACTTGGTT 4184044 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || ||| |||||| | ||||||||||||||| Sbjct 1644010 AAGATCCAAGACAAGGAAGGAATTCCACCAGACCAGCAAAGATTGATCTTCGCCGGAAAG 1643951 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||| | ||| | |||| |||||| ||||||| ||||| ||||| ||| Sbjct 1643950 CAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 1643891 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 1643890 TTGGTTCTCCGTCTTCG 1643874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181771603385329