Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq365 87.8 5e-13 seq2112 86.0 2e-12 >seq365 Length=3923 Score = 87.8 bits (96), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 229 CACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTG 288 || ||||||||| || ||||||| || ||| |||||||||||||||||| || || Sbjct 962 CAACACGATTTCGGTGCTGTAGCGGTCGTTGCCGTTCTGGTCCTGCCACTTGCGGGTCTG 1021 Query 289 CAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGC 348 ||| |||||||| || | |||||| || || ||| ||||| ||| | | || Sbjct 1022 CAGTGCGCCTTCGATATAAACCTTGGCACCCTTTTTCAGATACTGCTCGGCAACCTTGGC 1081 Query 349 CAGCTTTCC---GAAGATGACCACGCGGTGCCATTCCGT 384 || ||| | ||| ||||| |||| ||||||||| || Sbjct 1082 AAGATTTTCGTTGAAAATGACAACGCTGTGCCATTCGGT 1120 >seq2112 Length=10038 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 295 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTT 354 |||||| | | | ||| |||||| ||||||||||||| || |||||| || | ||||| Sbjct 9100 GCCTTCGACGTAGACCGAGCTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTT 9159 Query 355 TCCGAAGATGACCACGCGGTGCCATTCCGT 384 ||||||| ||||||||||||||||| || Sbjct 9160 GCCGAAGAACACCACGCGGTGCCATTCGGT 9189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135396375952394