Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_025440.1 Length=134369 Score E Sequences producing significant alignments: (Bits) Value seq1741 277 2e-69 >seq1741 Length=13656 Score = 277 bits (306), Expect = 2e-69 Identities = 646/966 (67%), Gaps = 10/966 (1%) Strand=Plus/Plus Query 75663 CTCATAAGTCATCGAACCCATTGTCTAAGTTTGTTTTCTTGTAACTAGAGTTACGCATTT 75722 |||| | ||| ||||| || ||||| | ||| || ||||||||||| | || ||||| | Sbjct 3815 CTCAGAGGTCGTCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 3874 Query 75723 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 75782 |||| |||||||| || ||||| || ||||| |||||||| || || ||||| | ||| Sbjct 3875 CGAAGAAGTCGGTCTTGGTTTCAGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCATCA 3934 Query 75783 AATTTTCTGT-GTGACCTTGATACATTGGTTGAAGACCTAGCATCCCTAACATTTTATTA 75841 || || || ||| | || |||| ||| | || ||||| || ||| || || Sbjct 3935 CGTTGTCGGTGGTGTCGCTG-TACAGGCGTTCGATGCCGAGCATGCCGGCCATCTTGTTG 3993 Query 75842 GCACGATATTTTACATAGTCTAACATCTCTTCCACATCAATTCCTTCAATGCCCTGTAGT 75901 || || || || || ||| | |||||| ||||| || || || || || || | || Sbjct 3994 GCGCGGTACTTCACGTAGCGCACCATCTCGTCCACGTCGATGCCGTCGATACCGTCCAGC 4053 Query 75902 ACCTCACTAGACCAC-GCTTGTTCTAGCTCTACGGCATGTCTAAAAGAAGCATACACGTA 75960 ||||| |||||| || | || ||||| | ||| || || || | |||||| Sbjct 4054 ACCTCCGACGACCACTGCGT-CTCCAGCTCGATGGCGTGCTCGAACGATTGGTGCACGTA 4112 Query 75961 GTCATTTAGTTCATCTGTTTGTAGTTCAGGGTTTTCCCCTACAATAGCTCTAATTAGCTC 76020 | | | || || | || || || || ||||| || || | || || | || ||||| Sbjct 4113 GGCGGTCAGCTCGTTGGTCTGCAGCTCCGGGTTCTCGCCGATGATGGCGCGGATCAGCTC 4172 Query 76021 AGAAATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGT 76080 || ||||| | ||| || | ||| || || || |||||||| ||||| || || || Sbjct 4173 GCTGATGAACTTGGTATGCGCCAGCTCGTCGCGGTTGATGAAGCTGATGATCTTGCCGGT 4232 Query 76081 TCCCGTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATT 76140 || |||| ||| || || || | ||| |||||||| ||||| ||| ||||| || Sbjct 4233 GCCGTTCATGCGGTTCTGCCGCACCATGTTGTAGAAGTACGCAAACCCGGAATAGAAGTT 4292 Query 76141 AATACCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTT 76200 || || || | ||| || || || | | | || | || | || | || || | Sbjct 4293 GATGCCTTCCAGGATCGAGGACTGGATCAGCGACTTCAGCAGCGTTTCGGCGGTCTTCTC 4352 Query 76201 ATTCATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTG 76260 |||||| ||||| || | ||| || ||||| || || || || || || ||||| Sbjct 4353 GCGCATGAAGTCGTCGTACGCGCCCATGATCGGTGCGTTGCGCTTGATGATGGTCGGGTG 4412 Query 76261 TGTTCTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTAC 76320 || | || ||| || | || ||||| | | | || || || || || || || Sbjct 4413 GGTGCGGGCGATCTCGAAGATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGAAC 4472 Query 76321 ATAAGAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATG 76380 || || ||||| || || || |||| || || | || || |||| | | ||||| Sbjct 4473 GTAGCTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCTGCATTGGCATG 4532 Query 76381 AACAGAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTC 76440 | | || ||| ||| ||||| || | || || || || || || || |||||||| Sbjct 4533 CGCGGCGGGATCGGTGATGTACTCGGCCACGTTGTAGATGAAGCGGGTCTGCGGTGAGTC 4592 Query 76441 AAGTGTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTCTTC-TTCGGAT--AA 76497 || || || | || ||||| |||||||| | || |||| ||| || || | Sbjct 4593 GAGCGTGGCCAGCAGGCCGATGATGGAGTCGTAGGC---GTTCTTTTCGCGCGCATTGAG 4649 Query 76498 GTGGTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGT 76557 | | |||||| ||||||| |||||| || ||||| ||||| | |||| | || || Sbjct 4650 CTCGCCGTACTGGCGGGCATCGAGCTTCATGTCGACCTCGTCAGGAATCCAGAAGTTGGT 4709 Query 76558 AGTTAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGAT 76617 | | ||| ||||| || |||||||| || || ||| | || ||||||||||| | ||| Sbjct 4710 CGACAGCTCCTTGTAGGCCCGATAGAACGACGGGTACGGGATGTCGTTCCAGTTGAGGAT 4769 Query 76618 ACCACT 76623 || || Sbjct 4770 GCCGCT 4775 Score = 156 bits (172), Expect = 4e-33 Identities = 374/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 78030 TCATAGTAGTCTTGTAGGTACCAGCCTTTTTTCTGCTTAACCTCGTAAGGGTCAAATAAA 78089 || ||| |||| |||||||||||||| || |||||| ||||||| || || || | Sbjct 6106 TCGTAGAAGTCCTGTAGGTACCAGCCCTTGGCCTGCTTCACCTCGTGCGGATCGAACAGG 6165 Query 78090 TACCATTCCCCTCTATTCTCTACAGCTTCCATAAATAAATCAGGAATAGAAACAGAAGTA 78149 ||||| || | | || || |||||||| || | || || | | || ||||| Sbjct 6166 TACCAGTCGGCGCGGCGTTCGACCGCTTCCATGAACAGGTCCGGCACGCAGACCGAAGTG 6225 Query 78150 AAAATGTCGTGAGCTCGTAAACGTTGGTCTCCGTTGTTTAGTCTTAAATCCAGAAAGGCT 78209 || | ||||| || || | || ||||| |||||||| || | | |||| |||||| Sbjct 6226 AACACATCGTGCGCGCGCAGGCGCTGGTCGCCGTTGTTGAGGCGCAGGTCCATGAAGGCT 6285 Query 78210 TCTATATCTTTGTGGAAAACGTCTAACGTTACA--GTTATAGCACCTTTTCTTGCT--CC 78265 || ||||| ||| | | ||| | | |||| | || || || || | ||| || Sbjct 6286 TCGATATCGCGGTGCCAGATGTCCA--GGTACACCGCTACTGCGCCCTTGC--GCTGGCC 6341 Query 78266 TAATTGGTCTACACTAACAGCCGTGTTGTTCAACTGTTTAATCCAAGGTACTGTTCCTCC 78325 | || || || || || |||||||| | ||| || ||||| ||||| || || Sbjct 6342 GAGCTGATCAACCGACACCGCAGTGTTGTTGAGCTGCTTGATCCACGGTACCACGCCACC 6401 Query 78326 ACTAGCATCGAGAACTCCTCTAATGGGTGCTC--CTGATGACCTTACATTGCCTATATAG 78383 | || | || || | || || || | ||| || | |||| ||| | |||| Sbjct 6402 GGAGGAATTGGCCACGCCACGGATCGGCGCGCCGCTGCTG--CGCACATAGCCCAGATAG 6459 Query 78384 ACACCTACGCCTCCTCCTTGCTTAGAAACTCTAGCAACATCTGTATTACTATCATAAATA 78443 |||| ||||| || || || || ||||| | || | ||| || || ||||| || Sbjct 6460 GCACCAACGCCGCCGCCGTGTTTCGAAACACGGGCGATATCGGTGTTGGAGTCATAGATG 6519 Query 78444 CCTTGCAAACTGTCGTCTACCGTATCTATAAAACAACTAGATAGTTGCCCGCCTACTTTA 78503 || |||| |||||||| ||||| || || || || || || | |||||||| || || Sbjct 6520 CCCTGCAGGCTGTCGTCCACCGTGTCGATGAAGCAGCTCGACAACTGCCCGCCCACCTTG 6579 Query 78504 CCTGCATTTGCTAATGTGGGGGTTGCCACTGTCATATACAAGTTACTTAACGCCCAGTAA 78563 || ||||| || | || || || ||||| ||||| |||| ||| | ||||||||| Sbjct 6580 CCGGCATTGGCCAGGGTCGGTGTGGCCACCGTCATGTACAGGTTGGACAGCGCCCAGTAC 6639 Query 78564 GCTTCTTCTACTAACTTCAT 78583 || ||| | || | || ||| Sbjct 6640 GCCTCTCCGACCAGCTGCAT 6659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429838978911370