Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_026608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq1853 96.9 9e-16 >seq1853 Length=10795 Score = 96.9 bits (106), Expect = 9e-16 Identities = 186/268 (69%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 38850 CGGGCCGCGCAAATCCGCACGCCTATTACCGACGGTGCCTACGGTAAA-CCATGGGTATT 38908 || || |||||| |||||||| || || || || || | ||| ||| |||||||| | Sbjct 5149 CGAGCAGCGCAAG--CGCACGCCAATCACGGATGG-GCTTGCGGGAAAGCCATGGGTTTA 5205 Query 38909 CCGCAACAAAGACTTCCGTTCTTGGTGGAATAACTACCATTACAACCGCCCCGGCTACGT 38968 ||| |||||||| | || || ||||||| ||| || || || ||| | | Sbjct 5206 CCGATACAAAGACATTCGCTCATGGTGGAGCAACCCGCACTATAATCGCATTGATGGTGC 5265 Query 38969 CGAAGACGCTT-CGCCGACGGGTTGGGTTCCTAATTCAAAGCCGATTTGGTTTACTGAAT 39027 ||| | | ||| |||| |||| |||| || | |||||||| || ||||| || ||| Sbjct 5266 CGAGG-CTCTTACGCCAACGGCATGGGCCCCACAATCAAAGCCCATATGGTTCACCGAAC 5324 Query 39028 TCGGCTTTCCTGCGGTCGATAAAGGCACCAATCAACCAAACGTTTTCTACGACCCTAAGT 39087 | || | ||||||||||||||||| | || || || || || ||| || || || | Sbjct 5325 TGGGATGCCCTGCGGTCGATAAAGGGCCAAACCAGCCTAATGTGTTCCCTGATCCGAAAT 5384 Query 39088 CTTCCGAAAGCGCCTACCCCTACTTTTC 39115 | || |||| ||| ||||| ||||| Sbjct 5385 CCTCGGAAAACGCGACACCCTATTTTTC 5412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134570807805590