Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 >seq3 Length=15630833 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 4185532 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 4185473 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || ||||| || || || || ||||| || |||||||| |||| Sbjct 4185472 ACAAGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCG 4185413 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| ||||| |||||| || | ||||| || | ||| | Sbjct 4185412 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGA 4185353 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||| ||||| || ||||| | || || ||||| || ||||| Sbjct 4185352 CTTCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| | ||| || ||||| ||||| || ||||||||||| Sbjct 4183835 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4183776 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || ||| || ||||| || || || || || | | |||||| || || | Sbjct 4183775 AAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4183716 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| ||||| |||||| || | || ||||| | |||| Sbjct 4183715 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCA 4183656 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 4183655 CCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || ||||| || ||||||||||| Sbjct 4184572 CCTCCACGAAGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 4184513 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || || || ||||| | |||||||| || || Sbjct 4184512 AGGGTACGACCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 4184453 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || ||||| || || || || || ||||| || | |||| ||||| || | ||| || Sbjct 4184452 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGTTTTCAATAGTGTCCGAGGCTTCAAC 4184394 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || || || || || | |||||| |||||||| |||||| Sbjct 4184393 CTCTAGAGTGATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| | || || ||||| ||||| || ||||||||||| Sbjct 4184802 TTCCTCCTCTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4184743 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || || || ||||| || || || || || | | ||||||||| || | Sbjct 4184742 AAAGAGTTCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 4184683 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||| || || |||||| || | |||||| || | ||||| Sbjct 4184682 GGATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCTTCCA 4184623 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||| ||||| || ||||| | || || ||||| |||||||| Sbjct 4184622 CTTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | ||||| || || || || |||||||| |||||||||||| Sbjct 4186263 TCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 4186204 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | ||| |||||||| || || || || ||||| |||||||| || || || Sbjct 4186203 CAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGG 4186144 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| ||||| ||||| || | ||||| || | || || Sbjct 4186143 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGAC 4186084 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || ||||| | ||| || || || || ||||| Sbjct 4186083 TTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | || | ||| || || |||||||| || ||||||||||| Sbjct 4184063 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCG 4184004 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || ||||| || || || || || | | ||||||||| || | Sbjct 4184003 AGAGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 4183944 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || |||||||| || ||||| || | || ||||| | || | Sbjct 4183943 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGA 4183884 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||| ||||| || || || | || || ||||| ||||||||| Sbjct 4183883 CCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4183834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || ||||| ||||| || |||||||||||| Sbjct 1643868 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1643927 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||| || || || || || ||||| | ||||| || || || Sbjct 1643928 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1643987 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| || | || ||||| | || || Sbjct 1643988 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1644047 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 1644048 TCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1644094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377874507480