Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2098 131 2e-25 >seq2098 Length=9782 Score = 131 bits (144), Expect = 2e-25 Identities = 348/527 (66%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 || || |||||||||||||| | || || || ||||| || || ||||||||||| Sbjct 4105 CCCGACGAGATCTACAACCTGGCCGCCCAAAGCCATGTCGGCGTCTCGTTCGAGGAACCC 4164 Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTC 161287 ||||| || || | | || | ||||| ||||| | | |||| || | || || Sbjct 4165 GAATACACGGCCAACGCCGACGGCCTGGGCACCCTGCGTCTCCTGGAAGCCATCCGCATC 4224 Query 161288 CTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTG 161347 || || | | || ||| |||||||||| |||||| ||| ||||||| || Sbjct 4225 CTGAAACTGGAGAACAAGGCCCGCTTCTACCAGGCCTCCACCTCCGAGCTGTATGGCCTG 4284 Query 161348 GTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTA 161407 || |||||||| || || || ||||| || || ||||| || || || |||| | Sbjct 4285 GTGCAAGAGACGCCGCAAAAGGAAACCACGCCGTTCTATCCGCGCAGCCCGTATGCGGCG 4344 Query 161408 GCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCC 161467 || || || || | || ||||| ||| ||| | || ||||| ||| | ||| Sbjct 4345 GCCAAGCTGTACGCCTACTGGATCAGCGTGAATTACCGCGAAGCCTATGGCATGTATGCC 4404 Query 161468 AGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGT 161527 | | || || || |||||||| || || || || || ||||| ||||| || || Sbjct 4405 TGCAACGGCATCCTGTTCAACCACGAATCGCCCAAGCGCGGCGAGACCTTCGTCACGCGC 4464 Query 161528 AAGATTACTAGGGGACTATCCCGTATTAGTAC-AGGACTACAGGATTGTCTATACCTAGG 161586 ||||| || | || || |||| | | || | || || ||||| || || ||||| || Sbjct 4465 AAGATCACCCGCGGCCTGGCCCGCA-TCGTGCTCGGCCTGCAGGAATGCCTGTACCTGGG 4523 Query 161587 TAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGG--AGGCTATGTGG 161644 || || | | || || ||||| || || ||||| || | | || | ||| Sbjct 4524 CAACCTGTCCGCCCTGCGCGACTGGGGCCACGCCCGCGACTACGTCGAAATGCAA--TGG 4581 Query 161645 TTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 ||||| | || ||||| || || || ||||| || || || || || Sbjct 4582 CTGATGCTGCAGCAGGACACGCCCGAGGACTACGTCATCGCGACCGG 4628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729899955734120