Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 168 9e-37 >seq3 Length=15630833 Score = 168 bits (186), Expect = 9e-37 Identities = 334/494 (68%), Gaps = 3/494 (1%) Strand=Plus/Minus Query 68363 CCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATAC 68422 ||||||| | || ||||||| || | || || || ||||| | |||||||| | Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 68423 CGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTG 68482 | || || || || ||||||||||||| ||||| || | || || |||| Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 68483 GATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542 | | ||| || || || || | |||||| |||||||||||| ||||| | ||| || | Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 68543 CCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602 |||| | ||||| ||| || | || ||||| | ||| ||| | ||||| | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 68603 CATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGA 68659 | ||||||| | | ||||||| ||||||||| | || || | |||||| | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 68660 TCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTT 68719 | ||||| ||||||| |||||| | | | | || | || ||||| || |||| Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 68720 GAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 68779 | || || || || | ||| | ||||| ||| || ||| || ||||| || | |||| Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 68780 CATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTAT 68839 | || ||||| || || |||||||| || ||||||||||| || |||| | | ||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 68840 TTCTAAGACCATGT 68853 | | || ||| ||| Sbjct 10144228 TGCGAACACCGTGT 10144215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880902916360