Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 >seq3 Length=15630833 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | | || | || || ||||| || ||| Sbjct 4184542 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTCAAGCTGCTTCCCG 4184483 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | || ||||| || || | || || || || ||||||| ||| Sbjct 4184482 GCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTG 4184423 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | |||||| | ||||||||| |||||||| |||| || || || |||||| Sbjct 4184422 ACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAGTT 4184363 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 4184362 TTCACGAAAATCTGCAT 4184346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917573792888