Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq1593 141 9e-29 seq139 114 1e-20 >seq1593 Length=9962 Score = 141 bits (156), Expect = 9e-29 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATC-TCGATTACGT 58161 ||||| || |||| | || |||| ||||| || ||| | | ||| |||| | || Sbjct 8768 GGCTGCAAGCCGGGCATCGTGCTCAATCCGGCCACCCCGGTG-GACATCCTCGACTGGGT 8710 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||| | |||||| || | ||||||||||| || ||||| ||||||||||||||| | Sbjct 8709 GCTGGACGACCTGGATCTGGTGCTGCTGATGTCGGTCAACCCGGGCTTCGGCGGCCAGGC 8650 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGG 58281 || ||||| | ||||||| || ||||||| ||||| || ||||| ||| Sbjct 8649 CTTCATTCCCTCGGCGCTGGACAAGCTGCGCGTGGTGCGCAAGATGATCGATGCCAGCGG 8590 Query 58282 TTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCGC 58341 | ||||| |||||||| | |||||||||||||||| |||| |||||||||||||| Sbjct 8589 CAAGGACATCCGCCTGGAGATCGACGGCGGCGTGAAGGCCGACAACATCGGCGAGATCGC 8530 >seq139 Length=9756 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 ||||||| |||||| ||| |||||||||| || || ||||| |||||||| || | Sbjct 781 GCACGCTGTCGCTGATCCGCGAAAACGGCTGTAAGGCCGGCCTGGTGTTCAACCCCGCCA 840 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 | ||||| || || || ||||| |||||||| | || |||||||| | ||||| | Sbjct 841 CCCCGCTGTCCTACCTGGACTACGTGATGGACAAGATCGACCTGATCCTGATCATGTCGG 900 Query 58197 TGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAG 58256 |||| || ||||||||||||||| || || || ||||| || |||||||| | Sbjct 901 TGAATCCGGGCTTCGGCGGCCAGAGCTTCATCCCCGGCGCGCTGACCAAGCTGCGCGAGG 960 Query 58257 TGCGTCGC-CGCATTGATGC 58275 ||| ||| ||||| || || Sbjct 961 CGCG-CGCGCGCATCGACGC 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471222461700520