Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 >seq3 Length=15630833 Score = 174 bits (192), Expect = 2e-38 Identities = 701/1089 (64%), Gaps = 75/1089 (7%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| | || | |||||||||| | Sbjct 10144659 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGC 10144600 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 || | | |||| | ||||| || ||| | |||||||||||||||||| ||| Sbjct 10144599 GGCGTAGCTTGGCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCC 10144540 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 ||||| || ||||| || || | |||||| ||| ||||| ||||| ||| || Sbjct 10144539 ACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAG 10144480 Query 118022 GTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGATCCACCCGCCTTGACCA 118080 | ||| || || ||||| || ||| || ||||||||||||||||| ||| | | Sbjct 10144479 TTCCTTGATGTCGTCTGGAAT-TCCTGGAATATTTTGGATGGATCCA---TTGTTGGCGA 10144424 Query 118081 TGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 ||| ||| |||||| || | ||||| | || ||| ||||||| || | | Sbjct 10144423 TGAGACGATTCTTCATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGT 10144364 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTG 118196 | |||||| | || ||||| | ||| || | ||| ||||| || | ||| Sbjct 10144363 GTGGATTGACGATTTGGAAGTCACCGGAGAGCACACGAC-GAGAGTAGATGTTAGAAGTG 10144305 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 |||||||||| | || ||||| || | ||| || || ||||| || || ||||| || Sbjct 10144304 TATGGCTCAATCGATTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGA 10144245 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCT--------------------TTT------CCC 118290 |||||||| || ||||| || | ||| | ||| | | Sbjct 10144244 GCCATGAGGAGACTGTTGCGAACACCGTGTCTGAAAGAAAATATAATATTTTGAATACTC 10144185 Query 118291 T-AAT----------------GCG--TTCCTTG---AGAGCGTCCCAGTCGTAGTTGAGC 118328 | ||| ||| || |||| || ||||||||| | | |||| Sbjct 10144184 TGAATTTTCAAATCTCACTTGGCGATTTTCTTGCGAAGCTCGTCCCAGTTGCA-TTGA-- 10144128 Query 118329 TTTGTC----TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCC 118384 || ||| | | | ||||||||||||||| || || | ||| |||| ||||| Sbjct 10144127 TTAGTCGGAGTAACTC-CCCACATATCAAACTGAAGTTGCCCCTTGGAAACTGGAGATCC 10144069 Query 118385 CTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGC 118444 ||| | || ||||| || || || ||||| ||| | || || || | || || Sbjct 10144068 CTCGTAAGTAGAGTATGGTCCATCTCGTTCAGCCAACTCGCAACTGGCTTCCAACGCAGC 10144009 Query 118445 GTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG-GAATCAAACG 118503 || || || || || || || | ||| | | |||||| || | || || | Sbjct 10144008 GTAGTAGATGGTCTCGAAGATTCTCTTATTGAGATCTCTGGCCT-GTGGAGAGGTGAATG 10143950 Query 118504 CGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGA 118562 || ||| ||| || || ||| ||||| |||||||| ||||| || ||||| ||| Sbjct 10143949 -GATAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACTCCGAGACCGATTGGACGA 10143891 Query 118563 TGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTA 118622 || | ||| || || || ||||| || || ||||| | || |||||| | | | Sbjct 10143890 TGGCGCATGTTCGAGTTGCGAGCCTCTTCAACTGGATAGTAGTTGACATCGATTATCTTG 10143831 Query 118623 TTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA 118682 || ||||| || || | ||||| || | ||| ||||| | |||| |||| | Sbjct 10143830 TTCAGATTCTTTGTTATGACCTTGGTAACCTCAGCGAGCTTGACAAAATC-GAACTTCTT 10143772 Query 118683 GTCTCTTCATTGAC-ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 118741 ||| || | || | || || || || || || ||||| || |||| ||| Sbjct 10143771 GTCGTTT--GTCACGAAACGGTTCAA-AGCAATGGATGCGAGATTGCAAACAGCAACCTC 10143715 Query 118742 ATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAA 118801 ||| | ||| |||||| ||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 10143714 ATCTGGAGCAGAGTACTCGATAATCTCCGTGCACAAGTTGGAGCACTTGATGGTTCCCAA 10143655 Query 118802 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGT 118861 ||||| || || ||||| || ||||||||||| |||||||| || || Sbjct 10143654 GTTCTGCTGGTTCGACTTGCGATTGGCGGCATCCTTGTAGGTGATGTATGGAAGTCCAGT 10143595 Query 118862 CTCCGTTTG 118870 ||| |||| Sbjct 10143594 CTCGATTTG 10143586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 225/342 (66%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| ||| | |||||||||||||| |||| |||| |||| || || || || Sbjct 10143020 GCAGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCGTTGGTTCCG 10142961 Query 119268 CGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 119327 ||| || | | || | || | ||| | | | ||| || || || || | | Sbjct 10142960 GCAATCACTGAACCAGTTGCACGGATCTTGTGCACATTGAGACCGATTCCTCCGGCACTC 10142901 Query 119328 TTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 119387 |||||||| | ||||||| | | | | || ||||||| || |||||||| | | Sbjct 10142900 TTTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTC 10142841 Query 119388 TTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTT 119447 | | | | |||||| ||||| || || | | ||| |||| |||||| |||||| Sbjct 10142840 ATCGTCAACAAGAAGCATGAAGACATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTT 10142781 Query 119448 GGTGTCGCGTGGATGAACATACC-TTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGG 119506 || | || || | | |||| | |||||| || ||| ||||| | | |||| Sbjct 10142780 GGCGAAGCATGTGT-CATGTACCGCTCCGACATCAAGTTGTACGTCTCAATCGCCGCGGC 10142722 Query 119507 AATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||||| | ||||| || || || | ||| ||||| ||||| Sbjct 10142721 AATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAACAT 10142680 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 129736 AACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAA 129795 ||| || |||||||||||||| ||||| || || | ||| |||||||| || || || Sbjct 12046932 AACGCGTTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCGAA 12046991 Query 129796 TGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGA 129854 ||| ||||| ||| | | | | ||| ||| | || | ||| ||| |||| | | Sbjct 12046992 TGGATTCTTGACGTTGTACAGCTTATCGCA-TCCGAGCTCCTGGAGCAGATGATCGGCAA 12047050 Query 129855 CGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCG 129914 || |||| ||||||| |||||| | | ||||||| ||||| | || || |||| Sbjct 12047051 CGAACTCGATGTACTGCGACATCAGCCGGCAGTTCATTCCGATCATGTCGACGGGCAGCG 12047110 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTC 129951 | || || |||| ||| ||| ||| | || || || Sbjct 12047111 CTTCGGTGAGGAACTCCTGCTCGATGGCGACGGCGTC 12047147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410083800440