Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq1 84.2 3e-11 >seq3 Length=15630833 Score = 134 bits (148), Expect = 2e-26 Identities = 687/1087 (63%), Gaps = 69/1087 (6%) Strand=Plus/Plus Query 104908 TCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 104967 ||||| ||||||||| |||||||| ||||| || ||| || | ||| || Sbjct 10143585 TCAAATCGAGACTGGACTTCCATACATCACCTACAAGGATGCCGCCAATCGCAAGTCGAA 10143644 Query 104968 TCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 || |||| ||||| |||||| | ||||| | || || || || | || | | Sbjct 10143645 CCAGCAGAACTTGGGAACCATCAAGTGCTCCAACTTGTGCACGGAGATTATCGAGTACTC 10143704 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 | ||||||| ||||| || || |||||||| || ||| | | | ||| Sbjct 10143705 TGCTCCAGATGAGGTTGCTGTTTGCAATCTCGCATCCATTGCTTTGAACCGTTTCGTGA- 10143763 Query 105088 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAA 105147 | | ||||| || || |||| || || ||| || ||||| || | || || Sbjct 10143764 -CAAACGACAA-GAAGTTCGATTTTGTCAAGCTCGCTGAGGTTACCAAGGTCATAACAAA 10143821 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 || || |||| | || ||| || | || || ||||| ||||| || || || Sbjct 10143822 GAATCTGAACAAGATAATCGATGTCAACTACTATCCAGTTGAAGAGGCTCGCAACTCGAA 10143881 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 ||| | || |||||||| |||||||| || || || ||||| ||| ||||| | Sbjct 10143882 CATGCGCCATCGTCCAATCGGTCTCGGAGTCCAAGGACTCGCTGATTGCTTCATGTTGAT 10143941 Query 105268 TCGCCACGCATTTGATTC-CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCA 105326 || | |||| || | || | || | || ||||| | | || || ||||||| Sbjct 10143942 GCGTTATCCATTCACCTCTCCAC-AGGCCAGAGATCTCAATAAGAGAATCTTCGAGACCA 10144000 Query 105327 TGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAA 105386 | || |||| || | || || |||| |||||||| || ||||| ||||| | Sbjct 10144001 TCTACTACGCTGCGTTGGAAGCCAGTTGCGAGTTGGCTGAACGAGATGGACCATACTCTA 10144060 Query 105387 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTG-CTTCAATTTGATATGTGGGAAGGTGAG 105445 | | ||||| ||||||| ||| ||||||| ||||| ||||||||||||| || | | Sbjct 10144061 CTTACGAGGGATCTCCAGTTTC-CAAGGGGCAACTTCAGTTTGATATGTGGGGAGTT-AC 10144118 Query 105446 ACCAAGCT--TCACTACGACTGGGA--AGCT-CTCAAGGAACGCATCAAG-GAGA----- 105494 || | || ||| | | ||||||| |||| | |||| || | |||| |||| Sbjct 10144119 TCCGA-CTAATCAATGCAACTGGGACGAGCTTCGCAAGAAAATCGCCAAGTGAGATTTGA 10144177 Query 105495 ---------------------------------------AGGGTCTTCGTAACAGTCTCC 105515 | ||| |||| |||||||||| Sbjct 10144178 AAATTCAGAGTATTCAAAATATTATATTTTCTTTCAGACACGGTGTTCGCAACAGTCTCC 10144237 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575 ||||||||||||||||||| || ||||| || || ||| | || || || |||| ||| Sbjct 10144238 TCATGGCTCCAATGCCAACTGCTTCCACTGCTCAGATCCTTGGAAACAACGAATCGATTG 10144297 Query 105576 AACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 | || ||||| | |||||||| ||| | | ||| | || || || || ||| Sbjct 10144298 AGCCATACACTTCTAACATCTACTCT-CGTCGTGTGCTCTCCGGTGACTTCCAAATCGTC 10144356 Query 105635 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA- 105693 || || | || | || || |||| || | |||||| | || |||||| | Sbjct 10144357 AATCCACACATGCTGAAGGATCTGGTTGAGAGAGGATTGTGGTCCGATGACATGAAGAAT 10144416 Query 105694 --TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATT 105751 |||||| | || ||| ||||| ||||||||| | |||||| | || || Sbjct 10144417 CGTCTCATCGCCAA---CAATGGATCCATCCAAAATATTCCAGGAATTCCAGACGACATC 10144473 Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCA 105811 ||| | | |||| ||| || ||||| ||| |||||| | || || ||||| || Sbjct 10144474 AAGGAACTTTACCTCACTGTCTGGGAGATCTCACAGAAGGAGATTATCGAGATGGCTGCC 10144533 Query 105812 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGG-AAAGTCCAAC 105870 |||||||| ||||| |||||| ||| | || || ||||| ||| | | | Sbjct 10144534 GATCGTGGAGCATTCATCGATCAATCCCAATCGCTCAACATCCACATGGCCAAGCCAAGC 10144593 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 | | || || | || |||||| | ||| | ||||||||||| ||||| || || || Sbjct 10144594 TACG-CCGCCATCACCTCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAAT 10144652 Query 105931 GTATTAC 105937 ||| ||| Sbjct 10144653 GTACTAC 10144659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| |||| || || |||||||| ||||||||| || || Sbjct 12047997 TCGTTCGCCGAGCGGCTCATCGCGTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGCTCG 12047938 Query 94855 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 ||| ||| | |||| |||||||||||||| ||||| |||||||| | | ||||| Sbjct 12047937 TTC-GCGTCGATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGATTGACCCATTCCAA 12047879 Query 94914 CGAGCTTATCTC 94925 |||||||||||| Sbjct 12047878 CGAGCTTATCTC 12047867 >seq1 Length=16658584 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/174 (71%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| | ||||| |||||||| |||||||| | || ||| || | ||||| || Sbjct 6116590 TATGGAAGAGTTGCTCCACGATCCGGTCTCGCAGCCAAGCATTTCATTGATGTTGGGGCT 6116531 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAA--TCACGGAG 154223 |||||||||||| || ||| || || |||| ||| |||||||||| ||| | Sbjct 6116530 GGTGTTGTTGATAGTGATTACCGTGGAGAGATCAAGGTCCTTCTTTTCAACTTCAACAAT 6116471 Query 154224 ACAAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGA 154277 || ||||| ||||| |||| |||||| | || ||||| || || ||||| Sbjct 6116470 AC--TGACTTCGAGGTCAAGAAGGGTGACAGAATTGCACAGCTCGTCTGTGAGA 6116419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237112320760