Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 156 5e-33 >seq3 Length=15630833 Score = 156 bits (172), Expect = 5e-33 Identities = 395/593 (67%), Gaps = 6/593 (1%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||| |||||||||| ||| || | || || || || | | Sbjct 10143248 AGTCCTGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCTTTTTCGACACGTTTC 10143189 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||| || || | ||| || ||| ||| | ||| || ||| ||| || | | Sbjct 10143188 ATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTC-TGG 10143130 Query 79444 CCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || | |||| || || | | ||| || | ||||||||| ||||| ||||||| || Sbjct 10143129 TCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTA 10143070 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||||||||| | || |||||| ||| || || | ||||| || || |||||||| Sbjct 10143069 GATGGCGAATGCTCCTGGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTT 10143010 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 | | || || ||||| || | || || | || ||||| || ||| || || Sbjct 10143009 GTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACTGA 10142950 Query 79623 ACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGT 79681 ||| | || || || || | ||| | || ||||| || |||| | ||| ||||| Sbjct 10142949 ACCAGTTGCACGGATCTT-GTGCACATTGAGACCGATTCCTCCGGCACTCTTTGAGATCA 10142891 Query 79682 GCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCA 79741 | ||||||| ||| | || |||||||| || |||||||| || |||| | | || Sbjct 10142890 GAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACA 10142831 Query 79742 GGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 |||||| ||||||||||| | || || | |||||| || || |||| || | Sbjct 10142830 AGAAGCATGAAGACATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAGCAT 10142771 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC-CTTGACGCGCGGGAGGTCGTCG 79860 | || | | || | ||||| | ||||||||| | | |||| | | ||||| Sbjct 10142770 GTGTCATGTACCGCTCCGACATCAAGTTGTACGTCTCAATCGCCGCG-GCAATGTCGTTT 10142712 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGAC 79913 |||||||| || | ||||| ||||| || | | ||| || ||||| |||| Sbjct 10142711 CCGTGGATTCCAATGGCGACACGCATCAACATCTGCTGTGGTCTCTCGACGAC 10142659 Score = 122 bits (134), Expect = 1e-22 Identities = 384/588 (65%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTC-CC 19155 |||| || ||| | | || ||||| ||||| | || ||||| || ||||| | || Sbjct 10142665 GAGAGACCACAGCAGATGTTGATGCGTGTCGCCATTGGAATCCACGGAAACGACATTGCC 10142724 Query 19156 GCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGAC 19215 ||| | ||||| ||| || ||||| || || | | || || || |||| || Sbjct 10142725 GCG-GCGATTGAGACGTACAACTTGATGTCGGAGCGGTACATGACACATGCTTCGCCAAC 10142783 Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275 ||||||||| | || || | || |||||||| || ||| | || | |||| Sbjct 10142784 TCTTTTCAACTCTGGAACATGCCGTCCACAGATGTCTTCATGCTTCTTGTTGACGATGAG 10142843 Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335 || ||| ||| || |||||||| || | ||| ||||||| | ||||| ||| | Sbjct 10142844 CGAGGACTCGATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCTGATCTCAAAGAG 10142903 Query 19336 GTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATG 19394 |||| || ||||| || | ||| | || ||||| | | |||| || || | Sbjct 10142904 TGCCGGAGGAATCGGTCTCAATGTGCAC-AAGATCCGTGCAACTGGTTCAGTGATTGCCG 10142962 Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454 | || |||||| | || | || || | |||||||| || |||| ||||||||| || Sbjct 10142963 GAACCAACGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACACTGCTC 10143022 Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514 | ||||| | || || ||| ||| || || | |||||||||||| | ||||||| Sbjct 10143023 GTTACGTTGATCAAGGAGGCAACAAGCGACCAGGAGCATTCGCCATCTACTTGGAGCCAT 10143082 Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG- 19573 |||| || ||| || | || || | | || || |||| | ||| || ||| | Sbjct 10143083 GGCATGCCGACATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCG--GACCAGAAGAGGA 10143140 Query 19574 -CGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGA 19632 || ||| ||| | ||| ||| | ||| | || || || |||||| | || || Sbjct 10143141 ACGTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAACGTGTCGA 10143200 Query 19633 GAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || || |||| ||| |||||||||| ||| ||||| || || Sbjct 10143201 AAAAGATCAAGATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGACT 10143248 Score = 120 bits (132), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT--AC 78247 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 10144667 GTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAG 10144608 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 || || ||| || || || ||||| |||||||||||| ||||| || |||| Sbjct 10144607 GTGATGGC--GGCGTAGCTTGGCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGA 10144550 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | || || || ||||| ||||| ||||| | | ||| || | |||||||||| | Sbjct 10144549 TGAATGCTCCACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAG 10144490 Query 78368 TCCGGTAAA 78376 | |||||| Sbjct 10144489 TGAGGTAAA 10144481 Score = 89.7 bits (98), Expect = 6e-13 Identities = 273/414 (66%), Gaps = 11/414 (3%) Strand=Plus/Minus Query 78787 GCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT-TGGTCTCGTC 78845 || |||| ||| | | ||||||||| | ||| ||||| || | |||| ||| || Sbjct 10144013 GCAGCGTAGTAGATGGTCTCGAAGATTCTCTTATTGAGATCTCTGGCCTGTGGAGAGGT- 10143955 Query 78846 GAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGG 78905 ||| | | | | || ||||||| ||| || || || ||||| |||| | |||| || Sbjct 10143954 GAATGGATAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACTCCGAGACCGATTGG 10143895 Query 78906 TCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGAC 78965 || ||||||||||| || || ||| | || || || |||| |||||| | Sbjct 10143894 ACGATGGCGCATGTTCGAGTTGCGAGCCTCTTCAACTGGATAGTAGTTGACATCGATTAT 10143835 Query 78966 GCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATG 79025 |||||| || || | |||| || ||||| | ||| | ||||| || | Sbjct 10143834 CTTGTTCAGATTCTTTGTTATGACCTTGGTAACCTCAGCGAGCTTGACAAAATCGAACTT 10143775 Query 79026 ATT-TCCTTTG--ATGAAAGTCGGT---AGGCACAGCGATGCCAGGTTGCACACGGCCGT 79079 || || |||| | |||| |||| | ||| | ||||| || ||||| || || Sbjct 10143774 CTTGTCGTTTGTCACGAAA--CGGTTCAAAGCA-ATGGATGCGAGATTGCAAACAGCAAC 10143718 Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||| || || ||| |||||| || || |||||||| || || |||||||||| || Sbjct 10143717 CTCATCTGGAGCAGAGTACTCGATAATCTCCGTGCACAAGTTGGAGCACTTGATGGTTCC 10143658 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGG 79193 | ||||| |||||| ||| || ||| ||||||||| ||||| || Sbjct 10143657 CAAGTTCTGCTGGTTCGACTTGCGATTGGCGGCATCCTTGTAGGTGATGTATGG 10143604 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || ||||| || ||| || || ||| | ||||||||| | || | | | ||| || Sbjct 12048429 TACAAGAAGGCCGTCGCCTCGTTTTGGACTGTCGAGGAGGTGGATTTGGGCAAAGATATG 12048370 Query 59655 AAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTC 59714 || |||||||| ||| | ||| |||||||||| | |||||| | |||||| |||||| Sbjct 12048369 AACGATTGGGAGAAGATGAATGGCGACGAGCAGTACTTCATCTCCAGGGTCCTTGCCTTC 12048310 Query 59715 TTCGCGGCGAGTGATGGAATTGT 59737 ||||| || ||||| ||||| Sbjct 12048309 TTCGCCGCCTCCGATGGTATTGT 12048287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548502523036560