Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=15630833 Score = 187 bits (206), Expect = 3e-42 Identities = 404/590 (68%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| || ||| | | || ||||| |||||| | || |||||||| ||||| | | Sbjct 10142665 GAGAGACCACAGCAGATGTTGATGCGTGTCGCCATTGGAATCCACGGAAACGACATTGCC 10142724 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||| | |||||||||| |||| ||| | |||| | || || || ||||||| Sbjct 10142725 GCG-GCGATTGAGACGTACAACTTGATGTCGGAGCGGTACATGACACATGCTTCGCCAAC 10142783 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || |||||| |||| || | || |||||||| |||||| || || |||||| Sbjct 10142784 TCTTTTCAACTCTGGAACATGCCGTCCACAGATGTCTTCATGCTTCTTGTTGACGATGAG 10142843 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 || |||||||| ||| |||||||| || | ||| |||| || | ||||| ||| | Sbjct 10142844 CGAGGACTCGATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCTGATCTCAAAGAG 10142903 Query 53413 GTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGG 53471 | || || |||||| || | ||| | || ||||||| | || || || | Sbjct 10142904 TGCCGGAGGAATCGGTCTCAATGTGCAC-AAGATCCGTGCAACTGGTTCAGTGATTGCCG 10142962 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || ||||| || ||||| || | || ||||| || |||| ||||||||| || | Sbjct 10142963 GAACCAACGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACACTGCTC 10143022 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 | ||||| | || || || ||||| | ||| | | |||||||||||| | ||||| Sbjct 10143023 GTTACGTTGATCAAGGAGGCAACAAGCGACCAGGAG-CATTCGCCATCTACTTGGAGCCA 10143081 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGAC--GAAGAGA 53648 ||||| |||||||| | |||||| | | || || ||| || | ||| |||||| Sbjct 10143082 TGGCATGCCGACATCTTCGAGTTTGTTGCTCTTCGAAAGAA-CACCG-GACCAGAAGAGG 10143139 Query 53649 TGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 || ||| |||||| |||| ||||| ||| | || || ||||||||| || || Sbjct 10143140 AACG-TGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAACGTGTC 10143198 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 || || || | || |||| |||||||||| ||||||||| || || Sbjct 10143199 GAAAAAGATCAAGATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGACT 10143248 Score = 129 bits (142), Expect = 6e-25 Identities = 307/453 (68%), Gaps = 21/453 (5%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| || ||| |||| ||||||||||| || || || ||||||||| | || ||| Sbjct 10144225 CGCAACAGTCTCCTCATGGCTCCAATGCCAACTGCTTCCACTGCTCAGATCCTTGGAAAC 10144284 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| || | ||||| ||||| | ||||||||| || || || | ||||| Sbjct 10144285 AACGAATCGATTGAGCCATACACTTCTAACATCTACTCTCGTCGTGTGCTCTCCGGTGAC 10144344 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || |||| ||| | | ||||| ||| ||| |||| ||| Sbjct 10144345 TTCCAAATCGTCAATCCACACATGCTGAAGGATCTGGTTGAGAGAGGATTGTGGT--CCG 10144402 Query 55664 CAGATCAAGACGGATATTGTG--CGG-AACGGGGGGTCCGTCCAGAATCT----GGAGAT 55716 || || || | || | | || ||| || ||| |||| ||| | ||| || Sbjct 10144403 ATGA-CATGAAGAATCGTCTCATCGCCAACAATGGATCCATCCAAAATATTCCAGGA-AT 10144460 Query 55717 TCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| || | ||||||| |||||| || || |||||||| |||||||| | | Sbjct 10144461 TCCAGA-CGACATCAAGGAACTTTACCTCACTGTCTGGGAGATCTCACAGAAGGAGATTA 10144519 Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835 | || ||| ||| |||||||| || | |||||| || ||||| || || |||||| || Sbjct 10144520 TCGAGATGGCTGCCGATCGTGGAGCATTCATCGATCAATCCCAATCGCTCAACATCCACA 10144579 Query 55836 TGGAGAATCC----TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 ||| || || | | | | ||| | | ||| |||||||| ||||| ||||||||| Sbjct 10144580 TGGCCAAGCCAAGCTACGCCG-CCA---TCACCTCAATGCACTTCTACGGATGGAAGAAG 10144635 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||||||||| || |||||||| |||| ||| Sbjct 10144636 GGACTCAAGACTGGAATGTACTACTTGCGTACC 10144668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193776190200