Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 125 6e-24 >seq3 Length=15630833 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || | ||||| || | || Sbjct 4186036 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 4186095 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||||| |||||||| ||||| || ||||| || || Sbjct 4186096 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4186155 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || || | || ||| | || | ||||| |||||| Sbjct 4186156 CAGCGCTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4186215 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||||||| | ||| | ||| | ||| | || || || Sbjct 4186216 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTTCGTGGAGG 4186262 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| || ||| | || ||||| || || ||| | || Sbjct 4185076 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCT 4185135 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || ||||||||||| || || || ||||| || || Sbjct 4185136 GACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 4185195 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || ||| | || || | || |||||||||||||| Sbjct 4185196 CAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAAC 4185255 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | ||| | ||| | || || || || Sbjct 4185256 ATCCAGAAGGAGTCTACTCTCCATCTCGTTCTTCGTCTCCGTGGAGGTAT 4185305 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| || ||| | || ||||| || || ||| | || Sbjct 4185532 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCT 4185591 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || ||||| || ||| Sbjct 4185592 GACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAA 4185651 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || ||||||||||| || || | || ||||||||| Sbjct 4185652 CAAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAAC 4185711 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| | ||| | || | ||| | || || || || Sbjct 4185712 ATCCAAAAGGAGTCGACGCTCCATCTTGTCCTTCGTCTCCGTGGAGGTAT 4185761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || ||| | || || || | ||| Sbjct 4183835 ATGCAAATCTTCGTCAAGACACTCACTGGAAAGACCATCACTTTGGAGGTCGAGGCTTCC 4183894 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || ||||||||||| || || || ||||| ||||| Sbjct 4183895 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 4183954 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || || | || || | ||| | || || |||||| Sbjct 4183955 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4184014 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || ||||| ||||| | || |||||| Sbjct 4184015 ATCCAGAAGGAATCGACTCTTCACTTGGTT 4184044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434900736876480