Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq2112 158 5e-34 >seq2112 Length=10038 Score = 158 bits (174), Expect = 5e-34 Identities = 236/327 (72%), Gaps = 16/327 (5%) Strand=Plus/Minus Query 7285 AACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAAC 7344 ||||||||||| ||||| || ||| |||| |||||||| |||| | | | Sbjct 9324 AACAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAGAGC 9265 Query 7345 GGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAG-CTGGAAGGACAAGCAGAC 7403 |||| ||| | ||| ||||| ||| ||||||| | || | | | ||||||||| | Sbjct 9264 GGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGAT-- 9208 Query 7404 CGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGA 7463 ||| | || |||||||| |||| | |||||||||||||||||||| || | || Sbjct 9207 -GGCAACCAGCAGGAACGTACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGCGA 9149 Query 7464 GATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCAC 7523 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 9148 GATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCTGCGCTA 9089 Query 7524 CCGCAAGT-GGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTCGACA 7582 | ||||| | ||| ||||| ||| ||| ||| ||||||| ||||| Sbjct 9088 CGACAAGTACACCGGC-CAGGATGGCGTGGAGAAGTACTCCACCGA---CATCGT----- 9038 Query 7583 TGCACGGACAGATGCAGATGCTTGGCG 7609 ||| || | ||||||||||| |||| Sbjct 9037 TGC-CGATGAAATGCAGATGCTGGGCG 9012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194811683509978