Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq2875 96.9 1e-15 >seq2875 Length=2430 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 53446 CATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAG 53505 |||||||||||| ||||||||| || ||| || || ||| || | |||| |||||| Sbjct 1288 CATCACAACTACGTGCAGAAGGAGACGCACCACGACCAGGAGCTGCTGGTGACGCGCAAG 1347 Query 53506 GGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGGCACCCGC 53565 |||||| || ||| | |||| | || ||| | |||||||||||||||||||| ||| Sbjct 1348 GGTGCGGTCAGTGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGCAGCATGGGCACGCGC 1407 Query 53566 TCGTATGTCGTCACCGGCAAGGGCAA 53591 || |||| ||||||||||| Sbjct 1408 AGCTACATCGTGCGTGGCAAGGGCAA 1433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188837514013532