Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq2875 113 2e-20 >seq2875 Length=2430 Score = 113 bits (124), Expect = 2e-20 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 54896 CAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGCATGTGG 54953 ||| ||| || |||| ||||| || |||||| | || |||||| ||| |||| Sbjct 544 CAGGCGCATGAGCAGCTGCGCAACA--TCGCCGCGATCCCGTTCGTCGGGCCGTGGGTGG 601 Query 54954 CGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCG 55013 | ||||||| || | ||| | ||||||||| | || ||| ||||||||||||| Sbjct 602 CCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTGGGCTCGGTGATCCCGACGC 661 Query 55014 AGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCGCGGCCC 55073 ||||||| |||| || |||||||| || ||||| || |||||||||||| ||||| | Sbjct 662 AGGGCGCGATCATCCCGGCCGCGGTCGGCGTCGACATCGGCTGCGGCATGGCCGCGGTGC 721 Query 55074 GCACCACG 55081 |||| ||| Sbjct 722 GCACTACG 729 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 55277 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 55336 ||||| || ||||||||||||||||| ||||||||||| |||||||| ||| | ||| Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACGGAC 993 Query 55337 CGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCG 55388 ||||||| || | |||||| || || || ||| ||| ||| ||||| Sbjct 994 ACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCG 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193819721783198