Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 210 5e-49 seq5 91.5 3e-13 >seq3 Length=15630833 Score = 210 bits (232), Expect = 5e-49 Identities = 182/226 (81%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | |||||||| || || || ||||| ||||||||||| ||||||| || Sbjct 4185756 TCCACGGAGACGAAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAG 4185697 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || || |||||||||| ||||| || |||||||| || | ||||||||| || || | Sbjct 4185696 AGTTCTACCATCTTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGAT 4185637 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||| ||||||||||| || |||||||||||||||||||| ||| ||||| Sbjct 4185636 TCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTC 4185577 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| |||||||| || |||||||| || || | ||||||| Sbjct 4185576 GAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 196 bits (216), Expect = 1e-44 Identities = 179/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || ||||||||||| ||||| || |||||||| || |||| || Sbjct 4184570 TCCACGAAGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAG 4184511 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || |||||||| || |||||||| | | ||| || || || |||| Sbjct 4184510 GGTACGACCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAAT 4184451 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||||||| ||| |||||||| || ||||| ||| ||||||||| Sbjct 4184450 TCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTC 4184391 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| |||||||| || ||||| || || || | ||||||| Sbjct 4184390 TAGAGTGATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 178 bits (196), Expect = 3e-39 Identities = 175/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || ||||| ||||| || |||||||| ||||| | ||| Sbjct 4185300 TCCACGGAGACGAAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAG 4185241 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || ||||| || |||||||| || | || ||||| || |||| Sbjct 4185240 AGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAAT 4185181 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| || ||||| ||| || || |||||||||||||| ||| ||||| Sbjct 4185180 TCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTC 4185121 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| |||||||| || |||||||| || || | ||||||| Sbjct 4185120 GAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||||||||| || |||||||| || |||| ||| || |||||||| ||||||||| Sbjct 4184776 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCCAGCTGC 4184717 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || | || || || || || | ||| |||||||| |||||||| Sbjct 4184716 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 4184657 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || ||||| |||||||| ||| || || | |||||| |||||||| ||| Sbjct 4184656 GCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACTTCCAAAGTGATGGTCTTTCCGGTG 4184597 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| Sbjct 4184596 AGGGTCTTGACGAAGATTTGCAT 4184574 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||| ||||||||||| || |||||||| || || | || Sbjct 1643870 TCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 1643929 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || ||||| || |||||||| | | ||| ||||| || |||| Sbjct 1643930 AGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAAT 1643989 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| || || || |||||||| || ||| || || || Sbjct 1643990 TCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTC 1644049 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| |||||||| || || | ||||| Sbjct 1644050 GAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1644094 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || || ||||| || ||||| ||||||||||| || || | | Sbjct 4186260 TCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAA 4186201 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||| || || |||||||| || |||||||| | ||| || ||||| || || | Sbjct 4186200 AGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGAT 4186141 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| ||||| || || || || |||||||||||||| || || || Sbjct 4186140 TCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTC 4186081 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| |||||||| || |||||||| ||||| | |||||| Sbjct 4186080 CAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || || | | ||| | |||||| Sbjct 4185515 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 4185456 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| || || || || | |||||||||||| Sbjct 4185455 TCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCT 4185396 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || |||||||| || ||| || || | |||||| ||| Sbjct 4185395 TGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTC 4185336 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | |||||| Sbjct 4185335 TTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || |||| ||| || ||||| || Sbjct 4183818 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCC 4183759 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | || ||||| || || | |||||||||||| Sbjct 4183758 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 4183699 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || |||||||| || || || ||||| || ||||| || Sbjct 4183698 TGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTT 4183639 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || || || | ||||| Sbjct 4183638 TTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || | || ||||| || |||| ||| ||||||||||||||||| Sbjct 4184945 CTTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 4184886 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || || |||||||| || |||||| ||||| |||||||||||||| || Sbjct 4184885 GGCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGT 4184826 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || | ||||||| Sbjct 4184825 CAACGTCTTGACGAAGATCTGCATT 4184801 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||| || || || || | |||||||||||| |||||||| Sbjct 4184206 CTTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 4184147 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| ||| ||| || ||||| ||||| || ||||| || Sbjct 4184146 AGCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGT 4184087 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || | ||||||| Sbjct 4184086 GAGTGTCTTGACGAAGATCTGCATT 4184062 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | | |||||| || || || | ||||||||||||||||||||| Sbjct 4185899 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCC 4185840 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || |||||||| || ||| || || | |||||| |||||||| || || Sbjct 4185839 TTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGC 4185780 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 4185779 GTCTTGACGAAGATCTGCAT 4185760 >seq5 Length=22087214 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/196 (70%), Gaps = 14/196 (7%) Strand=Plus/Plus Query 139719 TGGTTTTATTATCGTGGATGGCTCCGGTGTTTTATTTGCGACTCTTTCAGGAAGTACAAG 139778 ||||||||||||| ||||||| |||| ||| |||| || || ||||| ||| | Sbjct 13357285 TGGTTTTATTATCATGGATGGTAACGGTTGTTTGTTTGGAACACTCCAAGGAAATACTCG 13357344 Query 139779 AACAACAATCTCGAGTTTCCAAGTTTGCCTTC-------CAAAGAAGCACGGAAGAGGAG 139831 || || || ||||||| || || ||||||||||||| ||||||| Sbjct 13357345 TG----AAGTTC---TTCACAAGTTTACCGTCGATTTGCCAAAGAAGCACGGTAGAGGAG 13357397 Query 139832 GACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAACTACTTGAGAA 139891 |||| |||||| | ||||||| | || || || |||||| | ||||||||| | | | Sbjct 13357398 GACAGTCTGCTGTTCGTTTTGCTCGTCTGCGTAATGAAAAGCGTCACAACTACGTTCGCA 13357457 Query 139892 AAGTTGCAGAGAACGC 139907 |||| || || ||||| Sbjct 13357458 AAGTCGCTGAAAACGC 13357473 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 |||||||||||||| ||||||||||| |||||| | ||||||| | || || || ||| Sbjct 13363699 CCAAAGAAGCACGGTAGAGGAGGACAGTCTGCTGTTCGTTTTGCTCGTCTGCGTAATGAA 13363758 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGC 139907 ||| | ||||||||| | | ||||| || || ||||| Sbjct 13363759 AAGCGTCACAACTACGTTCGCAAAGTCGCTGAAAACGC 13363796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159103747037885