Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 >seq3 Length=15630833 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || |||||| | ||||| || | || Sbjct 4185304 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4185363 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| | ||||| ||||| | ||||||||||| Sbjct 4185364 GACACCATTGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAAGGAATCCCGCCAGATCA 4185422 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || || || || || || || || | ||| || || ||| ||||| Sbjct 4185423 GCAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTACAA 4185482 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 4185483 CATCCAGAAGGAGTCCAC 4185500 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || || ||||| || |||||||| || ||||| || | Sbjct 4184345 AATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAGCCTC 4184404 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||||| | ||| || || ||||| ||||| | || |||||||| Sbjct 4184405 GGACACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 4184464 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || ||||| || || || || || | || || | || ||||| Sbjct 4184465 GCAAAGATTGATCTTCGCCGGGAAGCAGCTTGAGGATGGTCGTACCCTCTCGGACTACAA 4184524 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 4184525 CATCCAGAAGGAGTCTAC 4184542 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || ||||| || ||||||||||| || || | | Sbjct 4185075 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTC 4185134 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || ||| ||||| || || | || ||||| | Sbjct 4185135 TGACACCATCGAGAATGTCAAAGC-CAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 4185193 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || ||||| || ||||| || || | ||| ||| | |||||||| Sbjct 4185194 AGCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACA 4185253 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || || ||||| || | ||| | ||| Sbjct 4185254 ACATCCAGAAGGAGTCTACTCTCCATCTCGTT 4185285 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || ||||| || ||||||||||| || || | | Sbjct 4185531 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTC 4185590 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || || || || ||||| | || ||||| || Sbjct 4185591 TGACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 4185650 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || ||| ||||||| | | ||| | |||||||| Sbjct 4185651 ACAAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAA 4185710 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 4185711 CATCCAAAAGGAGTCGAC 4185728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996215770492