Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq3036 96.9 1e-15 seq1669 95.1 4e-15 >seq3036 Length=2695 Score = 96.9 bits (106), Expect = 1e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 42757 ATGCTGATCCTGACCAGAAGACCCGGCGAAACCCTGCATATCGGCGACAACATCACCGTC 42816 ||| |||||||||| | | ||||||||||||| ||||| ||| | | |||| Sbjct 2216 ATGTTGATCCTGACTCGCCGCGTCGGCGAAACCCTGATGATCGGAGACTCGGTGAGCGTC 2275 Query 42817 ACGGTCCTTGGCAGCCAGGGCGACCAGGTGCGCCTCGGCATCACCGCCCCGGACGACGTC 42876 || || |||||| | |||| |||||||||| ||||||||||||| ||| | |||||| Sbjct 2276 ACCGTGCTTGGCGTCAAGGGTAACCAGGTGCGTATCGGCATCACCGCGCCGAAGGACGTC 2335 Query 42877 GCCATCCACCGCTCCGAGATCTACCAGC 42904 || | || ||| |||||||| |||| Sbjct 2336 GCTGTGCATCGCGAAGAGATCTATCAGC 2363 >seq1669 Length=8647 Score = 95.1 bits (104), Expect = 4e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 47944 CGAAACCCGGCGAGCGTCGATTTC-GGCGATCCAGCGCAAGCTGAAGATCGGCTACAACC 48002 ||||||||| || || |||||||| |||| | |||||| |||||||||||||||||||| Sbjct 6984 CGAAACCCGCCGTGCCTCGATTTCCGGCG-TGCAGCGCCGGCTGAAGATCGGCTACAACC 7042 Query 48003 GCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGGCCGACAGCA 48062 | ||||| || | |||||| ||||| | ||||| |||| || |||| || Sbjct 7043 GTGCAGCGCGATTGATCGAGGCCATGGAAGCGGCCGGCGTGGTCAGTCCGCCCGAGCACA 7102 Query 48063 ACGGCGGCCGCGAGGTACTGG 48083 |||||| |||| ||| |||| Sbjct 7103 ACGGCGACCGCACGGTGCTGG 7123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160457808998010