Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq1462 387 8e-103 seq2875 89.7 3e-13 >seq1462 Length=14439 Score = 387 bits (428), Expect = 8e-103 Identities = 526/729 (72%), Gaps = 6/729 (1%) Strand=Plus/Plus Query 78440 GACGCCAACACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTA 78499 |||||| ||| ||||| || || || || || | ||||| | || |||||| |||| Sbjct 47 GACGCCTCCACGCCGCATGAAGAAGCTGTTCTGTCGAACATTTCCTTTATGGAGGCGGTT 106 Query 78500 CACGCCAAGTCCTACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGA--TTGACG 78557 || || ||| || ||||||||||| ||||| ||| || | || | |||| Sbjct 107 CATGCACGGTCTTATTCGTCGATCTTCTCGACGCTGTGC--CTGACGCCTGACGTAGACG 164 Query 78558 AGGCGTTCCGTTGGTCGGAGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGG 78617 | || | || |||||||| || ||||| | |||||| | ||| | ||| | |||| | Sbjct 165 ATGCCTATCGCTGGTCGGAAGAAAACGAATTCCTGCAAAGGAAGTCGCAGCTGATCCTTG 224 Query 78618 ACTACTACCGCGGCGACGACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCT 78677 | | ||| | || || || | ||| |||| | ||||| | | ||||| ||| Sbjct 225 AAAATTACAATGCTGAAGATCCGCTTAAGAAGAAGATTGCCAGCGTGTTTCTGGAAAGCT 284 Query 78678 TCCTCTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGA 78737 |||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||| || | Sbjct 285 TCCTGTTCTATTCGGGCTTCTATCTGCCGATGTACTGGTCGAGCCGTGCCAAGCTCACCA 344 Query 78738 ACACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCG 78797 | || || ||| | || || | || ||||| || ||||| |||||||| || ||||||| Sbjct 345 ATACGGCTGACCTTATTCGCCTTATCATCCGCGATGAAGCCGTTCATGGCTATTACATCG 404 Query 78798 GATACAAGTACCAGCGAGGCCTCGAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGG 78857 | || ||||| ||||| | || |||| | | || | ||| |||||| Sbjct 405 GCTATAAGTATCAGCGCGCTCTTGAGAAGCTTGATGAAGCCAAAAAACAGGAGATCAAGG 464 Query 78858 AGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGA-GTGTGACTACACCGAGCAG 78916 | | | ||||||||| | |||||| |||||||| || ||| | || ||||| | Sbjct 465 ACTTTGCCTTCGATCTGTTGCTGGAGCTTTACGACAATGAAGTGCGT-TATACCGAAGCG 523 Query 78917 CTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAAC 78976 || ||||| | ||| || || ||||| |||||||| |||||||||| ||||| | ||| Sbjct 524 CTATATGATGGCGTTGGTCTGACCGAAGATGTCAAAAAGTTCCTGCATTACAATGCAAAC 583 Query 78977 AAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGAC 79036 ||||||||||||||||| || |||||||| ||||| || ||||| || || || Sbjct 584 AAGGCGCTGATGAACCTTGGTTACGAAGCCCTGTTTCCGGCGGAAGCCTGCAAGGTCAAC 643 Query 79037 CCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGG 79096 ||||| ||| | || ||||| || || | |||||| |||||||||||||||||||| Sbjct 644 CCGGCGATCCTCTCAGCGCTTTCGCCGAATGCCGACGAAAACCACGACTTCTTCTCCGGT 703 Query 79097 TCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTC 79156 ||||| || ||| || |||||||| |||| || || | |||||| ||||||||||| Sbjct 704 TCGGGTTCTTCCTATGTGATCGGCAAGGCTGTTGCGACAGAAGATGATGACTGGGACTTT 763 Query 79157 TGATGAAAA 79165 |||| |||| Sbjct 764 TGATTAAAA 772 >seq2875 Length=2430 Score = 89.7 bits (98), Expect = 3e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 45297 CCGTTCATCCATCCGCACGTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGTCCGCG 45356 |||||| || ||| ||||| |||||||||| | ||| |||||||| | | Sbjct 580 CCGTTCGTCGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACC 639 Query 45357 GTCGGCACTGTGATCCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGACATC 45416 || ||| | ||||||||||| | ||| | ||||| || |||||||||||||||||| Sbjct 640 GTGGGCTCGGTGATCCCGACGCAGGGCGCGATCATCCCGGCCGCGGTCGGCGTCGACATC 699 Query 45417 GGCTGCGGCATG 45428 |||||||||||| Sbjct 700 GGCTGCGGCATG 711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299309747706482