Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq1577 109 1e-19 >seq1577 Length=16492 Score = 109 bits (120), Expect = 1e-19 Identities = 208/301 (69%), Gaps = 13/301 (4%) Strand=Plus/Plus Query 25692 GAGAACAGCATCAGCATCTTCGACCCGATCGGGTACGACTGGTGGACTGGCGAGGGCGTC 25751 || |||| ||| ||| |||| || ||||| | ||||||| ||| || ||||| Sbjct 1102 GACAACACCATTTCCATTCTCGATCCAATCGGAGAGGACTGGTT---TGGGGATGGCGTT 1158 Query 25752 ACGGCCAAGCGCATCAGCGCCGCGTTGCGAGCCAT--GAAGGATGCCGACGTGGTGGTGA 25809 || ||||| ||||| || || ||||| ||| | | || |||||||| || Sbjct 1159 ACCGCCAAACGCATTTCTGCGGCTCTGCGAAACATCGGCAAGAAA--GACGTGGTCGTTT 1216 Query 25810 ACATCAACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTACAACCTGCTGCGCG 25869 |||||| || || || ||| ||||| |||||||||||||| ||||| || |||| Sbjct 1217 CGATCAACTCGCCGGGTGGCGATTATTTCGAAGGGCTGGCGATCTATAACCTCCTTCGCG 1276 Query 25870 AGCACAAGGGCAAGGTCACCGT-ACG--CGTGCTCGGCCTGGCAGCTTCCGCAGCGTCGT 25926 | || | ||||| || || | | |||| ||| | || ||||| || || || Sbjct 1277 AACATCCTGCGAAGGTGACTGTCAAGATCGTG---GGCATTGCGGCTTCTGCCGCATCAG 1333 Query 25927 TCATTGCCATGGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCTGATGATCCACA 25986 |||| || ||||| || || || ||| ||||||| || || || ||| | |||||||||| Sbjct 1334 TCATCGCAATGGCCGCAGACGAAGTGCAGATCGCGCGTGCGGGTTTCATCATGATCCACA 1393 Query 25987 A 25987 | Sbjct 1394 A 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133860435214154