Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 194 2e-44 >seq3 Length=15630833 Score = 194 bits (214), Expect = 2e-44 Identities = 469/701 (67%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || ||||| |||||||| ||||| | ||| ||||| || |||||||||||| ||| Sbjct 10143275 TCGAATTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 10143216 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || ||||| | || |||||||| |||||||| || | ||| ||||| | || Sbjct 10143215 CAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 10143156 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | || || | | | ||||| ||| || |||||| |||| | | |||||| | Sbjct 10143155 AAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAG 10143096 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 || || | ||||||||| || | || || || | |||| ||||| || || ||||| Sbjct 10143095 ATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGCTTGTTGCCTCCT 10143036 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | || | || ||||| || || || | | |||||| || | || || ||| Sbjct 10143035 TGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGAT 10142976 Query 78225 GTTCCATTTGTTCCAGAAATATAACT--TCCACTTGCGCGAATAT--TACTAATGGATAT 78280 ||||| || ||||| | | || ||| ||| |||| || || | | | || || | Sbjct 10142975 GTTCCGTTGGTTCCGGCA--ATCACTGAACCAGTTGCACGGATCTTGTGCACATTGAGA- 10142919 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || |||||||| || |||| || || |||||||| | ||||| || |||||||| || Sbjct 10142918 -CCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCC 10142860 Query 78341 CTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 || ||| || |||| || || ||| || || |||||| || || | | Sbjct 10142859 GAGAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCATG 10142801 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 |||| | || || | || || || ||||| || | | || || | | |||| Sbjct 10142800 TTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTCCGACATCAAGTTGT 10142741 Query 78460 ATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACA 78519 | || ||||| || | | ||||| | || ||||| | || ||||||||||||| Sbjct 10142740 ACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAACA 10142681 Query 78520 TATGCTGAGGTCTTTCAACCGTCTT-ATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 | ||||| ||||| || | || ||| || || || || | | ||| || || | Sbjct 10142680 TCTGCTGTGGTCTCTCGA-CGACTTCCTTGTTGATCTTGAGAAGGTAAGAACGCTCGAGC 10142622 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTA 78619 || || || ||||| ||| |||| || | ||||| ||||| Sbjct 10142621 GTCTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTA 10142581 Score = 158 bits (174), Expect = 2e-33 Identities = 297/436 (68%), Gaps = 3/436 (1%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || ||||| | |||||||| ||||| || || ||| ||||||||||||| Sbjct 10144676 GCTGGCTTGGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 10144617 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| || | || || || || | ||| || || || || | ||| || | Sbjct 10144616 TGCATTGAGGTGATGGCGGCGTAGCTTGGCTTGGCCATGTGGATGTTGAGCGATTGGGAT 10144557 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||||||||| ||||| | ||| || ||||| | ||||| ||| || | || ||| Sbjct 10144556 TGATCGATGAATGCTCCACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 10144497 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAA 77039 || | ||| | ||| || ||||| || ||||||| || ||||||| ||||| Sbjct 10144496 CAGACAGTGAGGTAAAGTTCCTTGATGTCGTCTGGAATTCCTGGAATATTTTGGATGGAT 10144437 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| | | || | |||||| || ||||| ||||||| ||||| | | Sbjct 10144436 CCATTGTTGGCGATGAGACGATTCTTCATGTCATCGGACCACAATCCTCTCTCAACCAGA 10144377 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | || | || ||||| || ||||| || || || || | || | ||||| ||| Sbjct 10144376 TCCTTCAGCATGTGTGGATTGACGATTTGGAAGTCACCGGAGAGCACACGACGAGAGTAG 10144317 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || ||| || ||||| || | ||||| |||||||| | || |||||||| |||||| Sbjct 10144316 ATGTTAGAAGTGTATGGCTCAATCGATTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCA 10144257 Query 77220 GTTGGCATAGGTGCCA 77235 |||||||| || |||| Sbjct 10144256 GTTGGCATTGGAGCCA 10144241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640587763360