Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 161 2e-34 >seq3 Length=15630833 Score = 161 bits (178), Expect = 2e-34 Identities = 166/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| || |||||||||||||||| | ||| | ||||| Sbjct 4185287 AGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCC 4185228 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || ||||||||||| | | ||||| ||||| | Sbjct 4185227 TCGAGTTGCTTT--CCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGT 4185170 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||||||| |||| | | |||| ||| || || || ||||| || | Sbjct 4185169 CTTGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGG 4185110 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || |||||||| ||||||| ||||||| Sbjct 4185109 TCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 145 bits (160), Expect = 2e-29 Identities = 167/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | || ||||| ||||| || ||||||||||| || | | |||| Sbjct 4183827 CTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTT 4183768 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || || || || || ||||| ||||||||||| || ||||||||||| | | ||||| Sbjct 4183767 CTTCCGTCCTCAAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTC 4183710 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| ||||| ||||||| |||| | | | || ||| ||| || || | Sbjct 4183709 CTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCA 4183650 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| || || | || || ||||||| ||||| Sbjct 4183649 GGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 145 bits (160), Expect = 2e-29 Identities = 167/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 4184794 CTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTT 4184735 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| ||||||||||| || |||||||| || | | ||||| Sbjct 4184734 CTTCCATCCTCCAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 4184677 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| ||||| || || ||||||| |||| | |||| ||| || ||||| | Sbjct 4184676 CCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACTTCCA 4184617 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || ||||| ||||| ||||||| ||||| Sbjct 4184616 AAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| ||||||||||||||||| | | |||||| |||||| Sbjct 4185743 AGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCT 4185684 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | |||||||||||||| || || || ||||| | | |||||||||||| || Sbjct 4185683 TCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCC 4185624 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | | |||| ||| || || || ||||| || || Sbjct 4185623 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTC 4185564 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| ||||||| ||||||| Sbjct 4185563 TTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 143 bits (158), Expect = 6e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || ||||| |||||||||||||| |||| ||||| | || || Sbjct 4186248 GAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTC 4186189 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| | | ||||||||| | | |||||||||||| Sbjct 4186188 CTCGAGCTGCTTT--CCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTG 4186131 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| ||||| |||||| |||| | | |||| ||| ||| ||||| | || || Sbjct 4186130 TCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATG 4186071 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| || |||| |||||| Sbjct 4186070 GTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 136 bits (150), Expect = 9e-27 Identities = 165/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | || ||||| ||||| || ||||||||||| |||| || || Sbjct 4185524 CTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTA 4185465 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| || |||||||| | | ||||| || | || ||||| Sbjct 4185464 CGTCCATCCTCAAGCTGCTTT--CCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTC 4185407 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| ||||| ||||||| |||| | | |||| ||| || ||||| | Sbjct 4185406 CTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCA 4185347 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || ||||| ||||||| |||||| Sbjct 4185346 AAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 131 bits (144), Expect = 4e-25 Identities = 157/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 1643888 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGA 1643946 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | || |||||||| | | ||||||||||| ||||| Sbjct 1643947 GTTGCTTT--CCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1644004 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| |||| | | | || || ||| ||||| || ||||| || || Sbjct 1644005 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTT 1644064 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| ||||||| ||||| Sbjct 1644065 ACCCGTCAGAGTCTTGACGAAGATTTGCAT 1644094 Score = 129 bits (142), Expect = 1e-24 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | |||||||| || || || ||||||||||| || | | || Sbjct 4184055 CTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTA 4183996 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| ||||||||||| || |||||||| || | | ||||| Sbjct 4183995 CGTCCATCCTCAAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 4183938 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| |||||||| || |||||| |||| | | | || ||| ||| || || | Sbjct 4183937 CCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCA 4183878 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || || ||||| ||||| ||||||| |||||| Sbjct 4183877 AAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4183834 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || |||||||||||||| || ||||||||||| || | | || | ||||| Sbjct 4184557 AGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCC 4184498 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||||||||| | || ||||| || | | ||||||||||| || Sbjct 4184497 TCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCC 4184438 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | |||| || || || || ||||| ||||| Sbjct 4184437 TGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTC 4184378 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| |||||||| | ||||||| Sbjct 4184377 TTTCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| | | ||||| || | | |||||||||||| ||||| || || Sbjct 4184205 TTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTA 4184146 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| || || ||||| || || || ||||| || ||| Sbjct 4184145 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4184086 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 4184085 AGTGTCTTGACGAAGATCTGCATT 4184062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| || ||||||||||| | | ||||| ||||| || || || || Sbjct 4184944 TTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 4184885 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| |||| | | |||| ||| || ||||| || || || || || || || Sbjct 4184884 GCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGTC 4184825 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | ||||| ||||||| ||||||| Sbjct 4184824 AACGTCTTGACGAAGATCTGCATT 4184801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153772768964079