Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 188 1e-42 seq4 114 3e-20 >seq3 Length=15630833 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || ||||| | || || || ||||||||||| || | Sbjct 4185303 ACCTCCACGGAGACGAAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGA 4185244 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| ||||| || ||||| ||||| | | || ||||| || Sbjct 4185243 AAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGG 4185184 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| ||||| || | ||||| ||||| ||||||||||| Sbjct 4185183 AATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGAC 4185124 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||||||||| ||||| || |||| |||||| ||||| ||||||||| Sbjct 4185123 CTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 179 bits (198), Expect = 8e-40 Identities = 188/246 (76%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 282854 CTAAAAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTT 282913 || ||||| |||| |||| ||||| || || || |||| || | ||| || || Sbjct 1643851 CTTAAAAAGGAAACA--AACCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTT 1643908 Query 282914 TTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAA 282973 |||||||||||||| | || || || |||||||| ||||| || ||||| |||||||| Sbjct 1643909 CTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAA 1643968 Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 | ||| ||||| ||||| || ||||||||||||||||| || || || | ||||| Sbjct 1643969 TCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGAT 1644028 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || || || || ||||||||||| || || ||||||||||||| |||||| ||||| || Sbjct 1644029 GGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGAT 1644088 Query 283094 CTGCAT 283099 ||||| Sbjct 1644089 TTGCAT 1644094 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || ||||| | ||| || |||||||||||||| || | Sbjct 4185759 ACCTCCACGGAGACGAAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGA 4185700 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || | ||| |||||||| ||||| | | ||||||||| || Sbjct 4185699 CAGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGG 4185640 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| || |||||||| || || ||| | ||||| ||||| ||||||||||| Sbjct 4185639 GATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGAC 4185580 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||||||||| ||||| || |||| |||||| ||||| ||||||||| Sbjct 4185579 CTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | || || || |||||||||||||| | Sbjct 4184573 ACCTCCACGAAGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGA 4184514 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || |||||||| |||||||| | ||| || || || Sbjct 4184513 GAGGGTACGACCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGG 4184454 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| ||||| ||| | || ||||||||||| ||||| || Sbjct 4184453 AATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAAC 4184394 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| ||||| || || | ||| || ||||| ||||||||| Sbjct 4184393 CTCTAGAGTGATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 159 bits (176), Expect = 7e-34 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || || |||||||||||||| | |||| || || |||||||| || || || || || || Sbjct 4185494 TCCTTCTGGATGTTGTAGTCGGACAAG-GTACGTCCATCCTCAAGCTGCTTTCCAGCGAA 4185436 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| ||||| || || ||| || || |||||||||||||| || ||||| || | Sbjct 4185435 GATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATT 4185376 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || |||||||||||||||||||| | |||||| ||||| || || | ||||| || Sbjct 4185375 CTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGAC 4185316 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 4185315 GAAGATCTGCAT 4185304 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| | || || ||||||||||||||||| | Sbjct 4186262 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 4186203 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || ||||| || || || || || |||||||| || || ||||| || Sbjct 4186202 AAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 4186143 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||||||||| || || || || | ||||| ||||| ||||| |||||| Sbjct 4186142 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACT 4186083 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | |||||| || || |||||||| Sbjct 4186082 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || |||| ||| | ||| || || |||||||||||||| | ||| || | Sbjct 4184791 AGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTT 4184732 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||||| ||||| | | || || || || || |||||| Sbjct 4184731 CCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCC 4184672 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| ||||| || | ||||| ||||| |||||||| ||||| | |||| Sbjct 4184671 TTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACTTCCAAAGTG 4184612 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | ||||| ||||| || ||||| Sbjct 4184611 ATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||| | | || ||||| ||||| ||||||||||| |||||||| Sbjct 4184944 TTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 4184885 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || || |||||||||||||| |||||||| ||||||||||| || ||| Sbjct 4184884 GCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGTC 4184825 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || ||||| ||||| ||||||||| Sbjct 4184824 AACGTCTTGACGAAGATCTGCATT 4184801 Score = 125 bits (138), Expect = 1e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || |||| || | || ||| || |||||||||||||| | || || || Sbjct 4184052 AGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGT 4183993 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||||| ||||| | | || || || || || |||||| Sbjct 4183992 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCC 4183933 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||| ||||| || || || | || || || || ||||| ||||| || | |||| Sbjct 4183932 TTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCAAAGTG 4183873 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || | ||||| ||||| || |||||| Sbjct 4183872 ATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4183834 Score = 120 bits (132), Expect = 6e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || | || ||||| || || || ||||| ||| Sbjct 4183797 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAG 4183738 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | || ||||| || || || |||||||||||||| || ||||| || | Sbjct 4183737 ATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTC 4183678 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || ||||| || || || || ||||| || || || ||||| || || ||| Sbjct 4183677 TCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACG 4183618 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 4183617 AAGATTTGCAT 4183607 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||||||||| ||||| || || || || || ||||||||||||||||| Sbjct 4184205 TTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTA 4184146 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || ||||| || |||||||||||||| ||||| || || || || Sbjct 4184145 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4184086 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| ||||||||| Sbjct 4184085 AGTGTCTTGACGAAGATCTGCATT 4184062 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||||||||| | |||||| || || || || |||||||| |||||||| || Sbjct 4185899 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCC 4185840 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || |||||||||||||||||||| | |||||| ||||| || || | Sbjct 4185839 TTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGC 4185780 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 4185779 GTCTTGACGAAGATCTGCAT 4185760 >seq4 Length=19682253 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042 |||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||| Sbjct 5497325 CCAAGCGTCGACTTCCGAGTTGTACGGAAAAGTACAAGAGATTCCACAAAGTGAAAAGAC 5497266 Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAA 44102 ||| || ||||| | |||||| | ||| || ||| | |||| || |||||| | Sbjct 5497265 TCCATTCTATCCAAGATCTCCATACGCTGTCGCTAAGATGTATGGGTACTGGATTGTTGT 5497206 Query 44103 AAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAG 44162 || || |||||| | ||| ||||||| || ||| ||| |||||||| || || Sbjct 5497205 CAACTACCGCGAGGCTTATAAAATGTTCGCATGCAATGGAATTCTCTTCAATCATGAGAG 5497146 Query 44163 TCC 44165 ||| Sbjct 5497145 TCC 5497143 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042 |||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||| Sbjct 5513004 CCAAGCGTCGACTTCCGAGTTGTACGGAAAAGTACAAGAGATTCCACAAAGTGAAAAGAC 5512945 Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAA 44102 ||| || || || | || |||| ||||| ||| | |||| || |||||| Sbjct 5512944 TCCATTCTACCCAAGATCCCCGTATGCCGTGGCTAAGATGTATGGATACTGGATTGTGGT 5512885 Query 44103 AAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAG 44162 || ||||| ||| | ||| ||||||| || ||| ||| || ||||| || || Sbjct 5512884 CAACTATCGGGAGGCTTATAAAATGTTCGCATGCAATGGAATTCTCTTTAATCATGAGAG 5512825 Query 44163 TCC 44165 ||| Sbjct 5512824 TCC 5512822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046695626536846