Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 >seq3 Length=15630833 Score = 131 bits (144), Expect = 1e-25 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | ||||| || || ||| |||||| ||||||||||| || Sbjct 4184804 CATTCCTCCTCTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 4184745 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || ||||||||||| ||||| ||||| | | |||||||||| Sbjct 4184744 CGAAAGAGTT--CTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCT 4184687 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | || ||||| || ||||| |||| | ||| | || ||||| | | Sbjct 4184686 GGTGGGATTCCCTCCTTGTCTTGGATCTTG-GCTTTGACATTCTCGATTGTGTCAGAAGC 4184628 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| |||| || || |||||||| ||||||||||| |||||||||||||| Sbjct 4184627 TTCCACTTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 127 bits (140), Expect = 1e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | ||||| ||| || ||| |||||| ||||||||||| || Sbjct 4185534 CATTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 4185475 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | || | || || |||||||| || || |||||||| || |||||||||| Sbjct 4185474 GGACAAGGT-ACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTG 4185416 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| || || || |||| | ||| | |||||||| | | | Sbjct 4185415 GCGGGATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCCGAAGCT 4185357 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| || || ||||| |||||||| ||||| Sbjct 4185356 TCGACTTCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| || | ||| || | || || Sbjct 4184554 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTCA 4184495 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||||||||| |||||||| | |||||||||| || | |||||||| ||| Sbjct 4184494 AGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGG 4184435 Query 44249 ATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | | || | || ||||| | || ||| ||||| | || || ||||| Sbjct 4184434 ATCTT-GGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTT 4184376 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || |||||||| || ||||| Sbjct 4184375 TCCAGTAAGAGTTTTCACGAAAATCTGCAT 4184346 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| ||||||||||| |||| ||| || | || || Sbjct 1643886 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 1643945 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| |||||||| | ||||| |||| || | |||||||| || Sbjct 1643946 AGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 1644005 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || || || | ||||| ||||| Sbjct 1644006 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTA 1644065 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| || ||||| |||||||||||||||| Sbjct 1644066 CCCGTCAGAGTCTTGACGAAGATTTGCATGA 1644096 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| |||||| || ||||| ||||||||||| || Sbjct 4184065 CATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTC 4184006 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || |||||||| ||||| ||||| | | ||||||||||| Sbjct 4184005 CGAGAGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGG 4183946 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | | | ||||| |||| | || Sbjct 4183945 TGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTC 4183886 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || |||||||| ||||| ||||| |||||||||||||| Sbjct 4183885 GACCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4183835 Score = 118 bits (130), Expect = 8e-22 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | ||||| ||| || ||| |||||| ||||||||||| Sbjct 4183840 TTGCATTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTA 4183781 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || |||||||| ||||| ||||| | | |||||| Sbjct 4183780 GTCCGAAAGAGTT--CTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGG 4183723 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 |||| || | |||||||| || || || |||| | ||| | ||||| |||| Sbjct 4183722 TCTGGTGGGATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTATCGGA 4183664 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | |||||||||| || || || ||||| || | || || ||||||||||||||||| Sbjct 4183663 AGCCTCCACCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATGAT 4183604 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || |||||||||||||||||| |||| | ||| |||| || Sbjct 4186244 ACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCG 4186185 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| |||||||| |||| || | |||||||| || Sbjct 4186184 AGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 4186125 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | | | |||||||| | | || || |||| || || |||||| Sbjct 4186124 ATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTT 4186065 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || ||||| ||||| Sbjct 4186064 CCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || || ||||| ||||||||||||||||||||| | ||||| | | || | Sbjct 4185740 ACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTT--CTACCATCTT 4185683 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||||||||| ||||| | | || || |||| || | |||||||| ||| Sbjct 4185682 CCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCT 4185623 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | || | |||||||| | | ||| ||||| | || || |||| Sbjct 4185622 GGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCT 4185563 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| |||||||| ||||| Sbjct 4185562 TTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4185532 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| |||||||||||||||| || || | || || || ||||| ||||| || Sbjct 4185267 CTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 4185208 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | | |||||| |||| || | || ||||| || ||||| |||| | | Sbjct 4185207 GATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTT-GGCTTTGACAT 4185149 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||| | | ||| ||||| | || || |||||||| || || ||||| | Sbjct 4185148 TCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGA 4185089 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 4185088 CGAAGATCTGCAT 4185076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| |||||||||||||| || |||||||||| || | |||||||| || ||||| Sbjct 4184206 CTTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 4184147 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | | | |||||||||| || ||| || || | || || || ||||| || Sbjct 4184146 AGCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGT 4184087 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||| ||||| Sbjct 4184086 GAGTGTCTTGACGAAGATCTGCAT 4184063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359976145392633