Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 185 2e-41 >seq3 Length=15630833 Score = 185 bits (204), Expect = 2e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| |||||||| ||| || ||| Sbjct 4185079 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCTGAC 4185138 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| |||||||| ||||| || ||||| || || |||||||| Sbjct 4185139 ACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 4185198 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || ||||| |||||| | |||||| ||||||| ||| || Sbjct 4185199 AGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAACATC 4185258 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 4185259 CAGAAGGAGTCTACTCTCCATCTCGTT 4185285 Score = 172 bits (190), Expect = 1e-37 Identities = 162/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | ||||||||||| |||||||| |||||||| || || Sbjct 4183610 CAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCCGAT 4183669 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || || ||||| ||||||||||| || |||||||| Sbjct 4183670 ACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAG 4183729 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| || || ||||| |||||| | || || ||| || Sbjct 4183730 AGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAACATC 4183789 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 4183790 CAGAAGGAGTCCACTCTCCA-CTTG 4183813 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| |||||||| ||| || ||| Sbjct 4185535 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCTGAC 4185594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 4185595 ACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAACAA 4185654 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||||||||| || || | |||||||| || ||||| | ||||| ||| || Sbjct 4185655 AGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAACATC 4185714 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || |||||||| Sbjct 4185715 CAAAAGGAGTCGACGCTCCATCTTGT 4185740 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||| | || |||||| || ||| Sbjct 4184577 CAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTTTGGAAGTGGAAGCTTCTGAC 4184636 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||||| || ||||| || |||||||| || || ||||| Sbjct 4184637 ACAATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAG 4184696 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| || |||||||| |||||| | || || ||| || Sbjct 4184697 AGACTCATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGAACTCTTTCGGACTACAACATC 4184756 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||| | || | | |||||| Sbjct 4184757 CAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTCTCAGA 4184795 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || ||||| || ||||| ||| ||| ||| Sbjct 4184349 CAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAGCCTCGGAC 4184408 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| ||||| |||||||| |||||||| || || || |||||| Sbjct 4184409 ACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAA 4184468 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || ||||| | || || | || || ||| || Sbjct 4184469 AGATTGATCTTCGCCGGGAAGCAGCTTGAGGATGGTCGTACCCTCTCGGACTACAACATC 4184528 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 4184529 CAGAAGGAGTCTACTCTTCACCTCGTT 4184555 Score = 156 bits (172), Expect = 1e-32 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || ||| || Sbjct 1644091 CAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCCGAT 1644032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || ||||||||| Sbjct 1644031 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAGCAA 1643972 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || ||||| |||||| | ||||| |||| || ||| || Sbjct 1643971 AGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATC 1643912 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 1643911 CAGAAGGAGTCCACTCTCCA-CTTGGTT 1643885 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||| | ||||| || || || Sbjct 4183838 CAAATCTTCGTCAAGACACTCACTGGAAAGACCATCACTTTGGAGGTCGAGGCTTCCGAT 4183897 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||| ||||| || |||||||| || || ||||| Sbjct 4183898 ACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAG 4183957 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| || |||||| | || || | || || ||| || Sbjct 4183958 AGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAACATC 4184017 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || || | ||| | | |||||| Sbjct 4184018 CAGAAGGAATCGACTCTTCACTTGGTTCTCCGCCTCAGA 4184056 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || |||||| | || || || || ||| Sbjct 4186039 CAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACCTTGGAAGTCGAGGCTTCTGAC 4186098 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 4186099 ACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAG 4186158 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| |||||||| || ||| | ||| | |||| || ||| || Sbjct 4186159 CGCTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAACATC 4186218 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||||| ||| Sbjct 4186219 CAAAAGGAGTCGACCCTTCATCTCGTT 4186245 Score = 136 bits (150), Expect = 1e-26 Identities = 156/206 (76%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || ||||| | || || ||| || ||| Sbjct 4185307 CAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCGGAC 4185366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || || || ||||| ||||||||||| || || |||||| Sbjct 4185367 ACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCGCCAGATCAGCAA 4185426 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | |||||||| ||||| ||||| || |||||| | || |||| |||| || ||| | Sbjct 4185427 CGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTAC-CTTGTCCGACTACAACAT 4185485 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || || || |||| Sbjct 4185486 CCAGAAGGAGTCCACTCTCCA-CTTG 4185510 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| |||||||| ||||| ||||| || ||| ||| ||| Sbjct 4184066 CAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTCCGAC 4184125 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 4184126 ACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 4184185 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | ||||| ||||| || Sbjct 4184186 CGATTGATCTTTGCCGGTAA 4184205 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| |||||||||||||| || ||| || ||| Sbjct 4184805 CAGATCTTCGTCAAGACGTTGACCGGAAAGACGATCACCCTCGAAGTTGAAGCTTCGGAC 4184864 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| ||||| |||||||| || ||||| || || |||||||| Sbjct 4184865 ACCATTGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATTCCACCAGACCAGCAG 4184924 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| |||||||| || || Sbjct 4184925 AGACTCATCTTCGCTGGTAA 4184944 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || ||||| | || || ||| || ||| Sbjct 4185763 CAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCGGAC 4185822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| |||||||| ||||||||||| || || || ||| Sbjct 4185823 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAACAA 4185882 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| || || Sbjct 4185883 AGATTGATCTTTGCTGG 4185899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203681091303306