Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 102 8e-17 >seq3 Length=15630833 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| ||||| || || || | Sbjct 4183824 AGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTT 4183765 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| |||||||| || || | ||| ||||| | || | | ||| Sbjct 4183764 CCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCC 4183705 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||| |||||| |||| || | | || ||| | ||||||||||| || Sbjct 4183704 TTGTCTTGGATTTTG-GCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGT 4183646 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || |||| ||| || ||||| || |||||| Sbjct 4183645 GATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATG 4183606 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 1643868 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1643927 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||| ||||| |||||||| |||| | || ||||| | ||| Sbjct 1643928 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1643987 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||| ||| || ||| | | | || ||| | ||| || Sbjct 1643988 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1644047 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || ||||||||||| ||||| ||||| || |||||| Sbjct 1644048 TCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATG 1644095 Score = 100 bits (110), Expect = 3e-16 Identities = 165/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||||| | | || || || ||||| | || ||||| || || |||||| || ||||| Sbjct 4186271 TACAT-ATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTT 4186213 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 |||||||| | ||||| |||| ||||||||||| || ||||| |||| |||||| || Sbjct 4186212 GTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTG 4186153 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCT 41805 ||| | || | | |||||||| |||||| ||| | | | ||||| Sbjct 4186152 GTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGA 4186093 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||| || |||| || || || || || || || ||||| || || |||||||| Sbjct 4186092 AGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 4184572 CCTCCACGAAGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 4184513 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| |||||||| |||| | || || || | ||| Sbjct 4184512 AGGGTACGACCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 4184453 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || |||| ||| || |||||| | || || Sbjct 4184452 ATTCCTTCCTTGTCCTGGATCTTG-GCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAAC 4184394 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || || || |||||||||||||| Sbjct 4184393 CTCTAGAGTGATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTGCAT 4184346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285224678800