Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq210 304 3e-78 >seq210 Length=3885 Score = 304 bits (336), Expect = 3e-78 Identities = 326/431 (76%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 12194 CTGCCGGAGCCGAAAAACTGGCAGCGGCTACTGTGCCGGGTGGTAAAAAAGTGAATATCA 12253 |||||||||||| ||| |||||||| || ||||| || || || |||||||| | | Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 12254 CCGTGATGGCCGTTGGTGACGGAGGCGGAAAACTGCCAGTGCCGGACGCCGGTCAGGTGC 12313 | | |||||||| |||||||| || ||| |||| |||||||| || |||||| | Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 12314 AGCTCGTGAATGAGGTCTGGCGCCATGCCCTGAATAAAATCAGCCAGGACAACCGGAACA 12373 | || ||| ||||||||||||| || |||||||||||| ||||| ||| ||| ||| | Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 12374 GCAATTACATTGTAGCCGAGCTGGTTATTCCGCCCGAGGTGGGAGGATTCTGGATGCGCG 12433 || || || || || || |||||| | ||||| || ||||| || ||||||||||| | Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 12434 AGTTGGGTCTTTATGATGACGAGGGCACTCTCATTGCTGTTGCCAATATGGCAGAAAGCT 12493 | | ||||| ||||| || | || || || ||||| || || || |||| |||||||| Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 12494 ACAAGCCAGAACTTGCCGAGGGCTCAGGCCGTGCGCAGACATGTCGCATGGTCATTATTG 12553 | ||||| ||||| || || ||||| || ||||||||||| || |||||||| ||||||| Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 12554 TCAGCAGTATTGCCTCAGTTGAATTATCCATTGATTCGACAATGGTAATGGCGACGCAGG 12613 |||| | | || || ||||| | |||||| | | | ||| ||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 12614 AATATGTTGAT 12624 | || || ||| Sbjct 3465 ATTACGTCGAT 3455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97870934476440