Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq3587 347 4e-91 >seq3587 Length=342905 Score = 347 bits (384), Expect = 4e-91 Identities = 197/199 (99%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 1 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27341 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 27282 Query 61 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACG 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 27281 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAAAAAGGAAACG 27222 Query 121 ACAGGTGCTGAAAGCGAGGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGT 180 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27221 ACAGGTGCTGAAAGCGA-GCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGT 27163 Query 181 GGAATGAACAATGGAAGTC 199 ||||||||||||||||||| Sbjct 27162 GGAATGAACAATGGAAGTC 27144 Score = 300 bits (332), Expect = 5e-77 Identities = 168/169 (99%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 48334 TGTATTGTCTGAAGTTGTTTTTACGTTAAGTTGATGCAGATCAATTAATACGATACCTGC 48393 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27510 TGTATTGTCTGAAGTTGCTTTTACGTTAAGTTGATGCAGATCAATTAATACGATACCTGC 27451 Query 48394 GTCATAATTGATTATTTGACGTGGTTTGATGGCCTCCACGCACGTTGTGATATGTAGATG 48453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27450 GTCATAATTGATTATTTGACGTGGTTTGATGGCCTCCACGCACGTTGTGATATGTAGATG 27391 Query 48454 ATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACG 48502 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27390 ATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACG 27342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155078041210560