Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3663 176 5e-39 >seq3663 Length=2118579 Score = 176 bits (194), Expect = 5e-39 Identities = 324/472 (69%), Gaps = 5/472 (1%) Strand=Plus/Minus Query 52797 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 ||||||| | |||||| |||| | | | || || ||||| || | |||||||||| Sbjct 1960525 CCTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTC 1960466 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || || || | |||||||||| || ||||| || | | | || || | Sbjct 1960465 CAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTG 1960406 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | | || || || ||||| | ||||||| |||||| ||||| ||||| | || |||| Sbjct 1960405 GTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAG 1960346 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 53035 |||| | ||||| |||||| | |||||||| | ||| ||| | ||| |||||| Sbjct 1960345 CCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC-CTTAATG 1960287 Query 53036 TCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 || |||| | | || | |||||||| ||||| | | || | | ||||| Sbjct 1960286 TCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTC 1960227 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || |||||| |||| ||| |||||| ||| | | || | ||| ||||| |||| Sbjct 1960226 ATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATC 1960167 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || || |||||||| | || | |||| || || || ||| || || || | ||| Sbjct 1960166 TGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGAC 1960107 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 1960106 TCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCA 1960055 Score = 168 bits (186), Expect = 8e-37 Identities = 477/725 (66%), Gaps = 16/725 (2%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| |||||||| | || | ||| || ||||| || ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 54010 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 ||| | || | ||||||| || || ||||| |||||||| |||||||| ||||| | Sbjct 1959019 CCAAT-TCTG--ATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAG 1958963 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || | || | | | | || || ||| || ||||| || | |||| | Sbjct 1958962 GAACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTC 1958903 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | || ||| | |||||| || || | ||| |||| | |||| || || |||||||| Sbjct 1958902 GAAAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCC 1958843 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||| ||||| | || | ||| |||||||| || || | | |||||| || | || || Sbjct 1958842 TCCTTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTT 1958783 Query 54247 GGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATT----ACTAATT 54301 |||| || || || || | ||| | || || |||||||||| || || ||| Sbjct 1958782 CGATGTTCCGTTAGTTCCAGCGATGACAGAA-CCGGTGGCACGAATCTTGTGGAC--ATT 1958726 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 || | || || || || || | || ||||| | || || | || || || || ||| Sbjct 1958725 GA--GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAG 1958668 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 || || || ||| || |||| | || | || || |||||||| |||| Sbjct 1958667 ATTCCAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGG 1958608 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 | ||||| | || || | || |||||||| || || | | || || | ||| Sbjct 1958607 CATGTTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGA 1958548 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 54541 |||||||||||||| || | | || ||| | || ||||| | | |||||||| Sbjct 1958547 TTGTACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATC 1958488 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 ||||| || || || | |||||||| | ||||| ||||| || | |||||| ||| Sbjct 1958487 AACATCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCA 1958428 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661 | |||||| || || || ||| |||| || | || || ||||| | || | ||||| Sbjct 1958427 AGAGTTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTC 1958368 Query 54662 AGTTT 54666 || || Sbjct 1958367 AGCTT 1958363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694363021600