Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001824.1 Length=102653 Score E Sequences producing significant alignments: (Bits) Value seq3642 93.3 3e-14 >seq3642 Length=748538 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 12780 AATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATG-CCAT 12838 ||| ||||| ||| |||| ||||| ||||||||||| | |||||| | || | || | Sbjct 123581 AATTGTCATACGAGACGGAACCGCATGAGGGTTAATGATGATATCAGG-AGTAAGTCCTT 123639 Query 12839 CTTTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGG 12898 | |||||||||||| | |||||| ||| || ||||| |||||||| || || Sbjct 123640 CAGCAGTGAAAGGCATATCTTCTTGCCGATACATGATACCCATTGTACCTTTCTGACCGT 123699 Query 12899 TAAAAGAAGCAAATTTATCTCCTATTTCAGGTATTTTTGGAGATCGTAATTTAATTTTAA 12958 | ||| |||||||| ||||| |||| ||| | | |||||| | | |||||||| Sbjct 123700 GACGAGATGCAAATTTGTCTCCAATTTGAGGGAGTCGAACAGATCGCATTCGAATTTTAA 123759 Query 12959 CAA 12961 ||| Sbjct 123760 CAA 123762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328350112858180