Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3658 89.7 4e-13 >seq3658 Length=1447888 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | ||| || | ||| | |||||||||||| || || || ||||||| Sbjct 43705 TTCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCG 43764 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| |||| || ||||| || || || | || ||||||||||| || | Sbjct 43765 AAAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 43824 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || || ||||| |||||| ||| || | | | || || | |||| Sbjct 43825 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCA 43884 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| || || || |||||||| || || |||||||| Sbjct 43885 CCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | |||||||||||| || || |||||||||| Sbjct 42473 CCTCCACGGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAG 42532 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| |||| || ||||| || || || | || ||||||||||| || || Sbjct 42533 AGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 42592 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | | | || ||| | || Sbjct 42593 ATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACC 42652 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | ||| || || || |||||||| Sbjct 42653 TCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422240313137720