Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq210 295 1e-75 seq1052 80.6 6e-11 >seq210 Length=3885 Score = 295 bits (326), Expect = 1e-75 Identities = 324/431 (75%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 12765 CTGCCGGTGCAGCAAAGCTGGCAGCGGCAACCGCGCCGGGAAGGCGGAAGGTCGGCATTA 12824 ||||||| || |||||||||||||| || || | || || || || || | | Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 12825 CCACGATGGCCGTCGGGGATGGCGGTGGTAAATTGCCTGTCCCGGATGCCGGACAGACCG 12884 | | |||||||| || || || ||| |||||||| || |||||||| || ||||| Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 12885 GGCTTATCCATGAAGTCTGGCGACATGCGCTGAACAAAATCAGCCAGGACAAACGAAACA 12944 || | ||||| |||||||| || || ||||| ||| ||||| ||| || || | Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 12945 GTAATTATATTATCGCCGAGCTGGTTATTCCGCCGGAGGTGGGCGGTTTCTGGATGCGTG 13004 || ||||| | || || |||||| | ||||| || |||||||| ||||||||||||| Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 13005 AGCTTGGCCTGTACGATGATGCGGGAACGTTAATTGCCGTGGCGAACATGGCCGAAAGCT 13064 | ||||| ||||| || ||||| ||||| | ||||| || || ||||||| ||||||| Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 13065 ATAAGCCAGCCCTTGCCGAAGGCTCAGGACGTTGGCAGACCTGTCGCATGGTCATCATCG 13124 ||||||| | || || |||||||| || ||| ||||||||| |||||||| || || | Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 13125 TCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACGGTGATGGCGACGCAGG 13184 |||| | ||||| || || ||||||| ||||| ||| ||||||||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 13185 ATTACGTTGAT 13195 ||||||| ||| Sbjct 3465 ATTACGTCGAT 3455 >seq1052 Length=3581 Score = 80.6 bits (88), Expect = 6e-11 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 33547 GCATTAAAACCGCCCCGTGAAGCGGGCGGGCGAGGCGGGGAAAGCAC 33593 |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3533 GCATTAAAACCGCCCCATGAAGCGGGCGGGCGAGGCGGGGAAAGCAC 3579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107371320419700