Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3658 82.4 6e-11 >seq3658 Length=1447888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || | || || || ||||| ||| ||| ||| || | Sbjct 43706 AATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTC 43647 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | ||||| || || || || ||||| | || |||||| Sbjct 43646 GGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 43587 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||| ||||| || || || ||| | || ||| ||| || |||||||||| Sbjct 43586 GCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAA 43527 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||||||||| || ||| |||| | || | ||||||| Sbjct 43526 TATCCAAAAGGAATCTACACTCCACTTGGTTCTCCGTCTCAGAGGAGG 43479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410778425829380