Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3649 163 3e-35 seq3618 143 3e-29 seq3658 129 6e-25 >seq3649 Length=974952 Score = 163 bits (180), Expect = 3e-35 Identities = 253/359 (70%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 |||||| ||| | | || || ||||| | ||||| || | ||||||||| || || || Sbjct 67258 CGAGCGCTTCTCAAACGAAGTCAAGGTGTCGGAGGCTCGATTCTTCTACGGATTCCAAAT 67317 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTC 116925 |||||| |||||| | |||||||| ||||| |||| |||||||| || ||| | || Sbjct 67318 CGCCATCGAGAACATTCACTCGGAGATGTACTCGAAGCTCATCGAAACCTACATTCGTGA 67377 Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCAT---CGAGA-CGATGCCGTGCGTCAAAG 116981 | | ||||| || | |||| |||||||| |||| ||| | | |||| Sbjct 67378 TGAGAAGGAGCGCCTTACTCTGTTCAACGCCATTTTCGAGTTCGAA----TTCATCAAGA 67433 Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || |||||| | | || |||| | |||| ||| || | Sbjct 67434 AGAAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCGTCGTTCGCCGAACGTC 67493 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | | |||||||| || ||||| || ||||||| || |||||| | || || | Sbjct 67494 TCATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTCAATCTTCT 67553 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 |||||||||| || || |||||||| || |||| | ||| ||||||||||| ||| Sbjct 67554 GGCTCAAGAAGCGAGGACTCATGCCAGGATTGACACACTCCAATGAGCTCATCTCAAGG 67612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || ||||| || ||||| | | ||| || || |||| | || || ||||| | Sbjct 67002 CGATTCGTCATCTTCCCTCTGAGACACCACGAAATCTGGCAATTCTATAAGAAGGCGGTC 67061 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || ||||||||||| ||||| || || || || |||||||| || ||| |||||| Sbjct 67062 GCCTCGTTCTGGACAGTCGAAGAAGTCGATCTTGGCAAGGACATGAACGATTGGGAGAAG 67121 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 |||||| |||||| | |||||| || || ||||| ||||||||| ||| Sbjct 67122 ATGAACGGAGACGAGCAGTACTTCATCTCCAGAGTTCTCGCCTTCTTCGCCGCCTCCGAT 67181 Query 116783 GGCATCGTCAACGAGAATCTGGT 116805 || || |||||||||||||| || Sbjct 67182 GGAATTGTCAACGAGAATCTTGT 67204 >seq3618 Length=512689 Score = 143 bits (158), Expect = 3e-29 Identities = 157/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || || ||||||||| |||| |||||||| | Sbjct 494952 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 495011 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| |||||| || || | ||||| || || ||||| || || | Sbjct 495012 CGACACTATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATC 495070 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| ||||||||| ||| || || || || || || | || || || |||||||| Sbjct 495071 AGCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACA 495130 Query 40868 ACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||||| |||| || ||| Sbjct 495131 ACATCCAGAAGGAGTCCACCCTCCAT 495156 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || || ||||||||| |||| |||||||| | Sbjct 509136 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 509195 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| |||||| || || | ||||| || || ||||| || || | Sbjct 509196 CGACACTATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATC 509254 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| ||||||||| ||| | || || || || || | || || || |||||||| Sbjct 509255 AGCAAAGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACA 509314 Query 40868 ACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||||| |||| || ||| Sbjct 509315 ACATCCAGAAGGAGTCCACCCTCCAT 509340 >seq3658 Length=1447888 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||| | || || |||||||||||| | || || || || || Sbjct 43933 ATGCAAATCTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTCC 43874 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||||||||| ||||| | || ||| Sbjct 43873 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 43814 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || ||||| || |||| | || || |||||||| Sbjct 43813 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAAT 43754 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 43753 ATCCAGAAGGAGTCCACTCTTCATCTCGT 43725 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| || || ||||||||| |||| || ||||| | Sbjct 42699 ATGCAAATCTTCGTGAAGACGCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42640 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||| || || ||||| | || ||| Sbjct 42639 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 42580 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || ||||| || |||| | || ||| ||||| || Sbjct 42579 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTCTCGGACTATAAT 42520 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 42519 ATCCAGAAGGAGTCCACTCTTCATCTCGT 42491 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| |||| ||||||||| | Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || || ||||| | ||||| Sbjct 41180 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCA 41122 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| || || ||||| || || | || ||| | |||||||| Sbjct 41121 ACAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAA 41062 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| | || || ||||| || Sbjct 41061 CATCCAAAAGGAGTCAACTCTTCATCTCGT 41032 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || || || ||||| | || || || || | Sbjct 41469 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTGGAGGCTTC 41410 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| |||| | || || | ||||||||||| ||||| | ||||| Sbjct 41409 CGACACCATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCA 41350 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| |||| ||| || || || || || || | || || ||| |||||||| Sbjct 41349 GCAAAGACTTATCTTCGCTGGAAAGCAACTCGAAGATGGACGTACACTCTCTGACTACAA 41290 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 41289 CATCCAGAAGGAGTCTACTCTTCA 41266 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || |||||||| | || ||||||||| | Sbjct 41970 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCT 41911 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || |||| ||||| || || || || | || ||| Sbjct 41910 GACACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAG 41851 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || || || || || | |||||| | ||||||||| Sbjct 41850 CAGAGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCACCTTGTCGGACTACAAC 41791 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 41790 ATCCAGAAGGAGTCGACCCTTCATCTCGT 41762 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| |||| || ||||| | Sbjct 42471 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42412 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || ||||| | || || Sbjct 42411 GACACCATTGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCA 42353 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| ||||||||| || || || || || || || | || || || ||||||||| Sbjct 42352 GCAAAGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAA 42293 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||| ||| |||| || ||| Sbjct 42292 CATCCAGAAAGAGTCCACCCTCCAT 42268 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || || || ||| |||| |||||||| | Sbjct 42928 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTCGAGGTCGAAGCTTC 42869 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||||| || || | ||||||||||| ||||| | || | Sbjct 42868 CGATACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATC 42810 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||||||| | ||| || || || || || || | || ||| | ||||||| Sbjct 42809 AGCAGAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGACGGACCTTGTCGGACTACA 42750 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||| |||||| |||| || ||||| || Sbjct 42749 ATATCCAAAAGGAGTCCACTCTTCATCTCGT 42719 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||||||||| || || |||||||| |||| ||||||||| | Sbjct 42243 ATGCAGATTTTCGTGAAAACGCTCACCGGAAAGACCATCACACTCGAGGTCGAAGCCTCT 42184 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||||| ||||| || || ||||| | || ||| Sbjct 42183 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAG 42124 Query 40810 CAACGACTCATCT 40822 || ||||||||| Sbjct 42123 CAGAGACTCATCT 42111 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || || ||||| |||| || ||||| | Sbjct 43203 AATGCAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTC 43144 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| |||||| ||| || | ||||||||||| ||||| | || | Sbjct 43143 CGACACAATCGAGAACG-TCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATC 43085 Query 40808 AGCAACGACTCATCTACGCGGG 40829 ||||| |||| |||| ||| || Sbjct 43084 AGCAAAGACTTATCTTCGCTGG 43063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195564319200