Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3658 98.7 9e-16 >seq3658 Length=1447888 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| ||||||| | ||||||||| ||||| || || ||||||||| |||||| Sbjct 42101 TTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTG 42160 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | | |||||||||| || | || || ||||| Sbjct 42161 GCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGTG 42220 Query 118716 AGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || |||||||||||| || Sbjct 42221 AGCGTTTTCACGAAAATCTGCATGCCT 42247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| |||||||| || || || || |||||||||||| ||||| Sbjct 41044 GTTGACTCCTTTTGGATGTTGTAGTCCGACAAGGTCCGTCCATCCTCGAGCTGCTTTCCG 41103 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| || || || || || || || ||||||||| || || || Sbjct 41104 GCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTG 41163 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | |||||||||| ||| | || || || || || || Sbjct 41164 ACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTC 41223 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 41224 TTGACGAAGATCTGCAT 41240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433810995579640