Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3658 89.7 8e-13 >seq3658 Length=1447888 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || ||||| || || || || |||||||| | | ||| || Sbjct 42263 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCA 42322 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||||||||| || | |||||||||||| ||||| |||||||| || ||||| Sbjct 42323 AGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTGTCTTG 42381 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | ||||| || | |||||||| || ||||| ||||| | Sbjct 43477 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGG 43536 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || | ||| |||||||| || || | |||||||||||| || | Sbjct 43537 ACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTG 43596 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || ||||| Sbjct 43597 GAATTCCTTCCTTGTCTTG 43615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743492290726400