Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3618 84.2 1e-11 >seq3618 Length=512689 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || || | ||||| || ||||| Sbjct 495143 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAG 495084 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| | ||||| || | || | | |||||||| ||||| ||| | | Sbjct 495083 ATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTC 495024 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| | |||||| || | |||||||| || |||||||| || ||||| Sbjct 495023 TCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACG 494964 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 494963 AAGATTTGCAT 494953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323057549595200