Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3663 235 5e-57 seq3658 98.7 9e-16 seq3618 82.4 7e-11 >seq3663 Length=2118579 Score = 235 bits (260), Expect = 5e-57 Identities = 473/696 (68%), Gaps = 4/696 (1%) Strand=Plus/Minus Query 23285 CAGTCGGCCAGGCCGGGCGATT-GCATCGGACACATGAGACTCCACAT-TGAGTCATTTT 23342 ||||| | || || || ||| |||| || ||||| ||| ||| | ||| || || | Sbjct 1959060 CAGTCATCAAGTCCTGGGCATTCGCATGGG-CACATCAGAGACCAATTCTGA-TCCTTCT 1959003 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | || || |||| || |||||||| ||||| |||||| ||||| || || || ||| Sbjct 1959002 CGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGAACAAGTCACGAGCACGCT 1958943 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||| ||| || |||||||| | || || || || || || |||||||| | Sbjct 1958942 CCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTCGAAAACATCGGCATGCCATG 1958883 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||||||||| | ||| || || || || | ||| || || || |||||||| ||||| | Sbjct 1958882 GCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTCCTTGATCGACATAACGAG 1958823 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 | ||||| ||||| || | ||||| || | ||| ||||| || | ||| || | Sbjct 1958822 CAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCGATGTTCCGTTAGTTCCAG 1958763 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | ||||| | || |||| ||||| || | || || || ||||| | | Sbjct 1958762 CGATGACAGAACCGGTGGCACGAATCTTGTGGACATTGAGCCCGATTCCTCCAGCGCTCT 1958703 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 |||| || | || || || |||| |||||||||||| || || ||||| | Sbjct 1958702 TCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAGATTCCAAGAATCGAATCCTCGCTCA 1958643 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 ||| | |||||| || || |||||||| | | || | | ||| || || | Sbjct 1958642 TCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCATGTTCCAGAGTTGAAGAGAGTTG 1958583 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | || || || | ||| | | |||||| ||||||||||| |||||||| ||| ||| Sbjct 1958582 GAGAAGCATGAGTCATGTAGCGCTCCGACATCAGATTGTACGTCTCGATGGCAGCAGCAA 1958523 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCG 23882 ||||||||||||| || ||||| | || ||||||| ||| | ||| || | ||| || Sbjct 1958522 TGTCCTCTCCGTGGATTCCGATAGAAACACGCATCAACATCTGTTGTGGCCGCTCAACGA 1958463 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 | | ||| ||||||| || || ||||||| | ||||| ||||| || ||| | Sbjct 1958462 TTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCAAGAGTTTTGAATCCGAAGTAGGTGT 1958403 Query 23943 AGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || | |||||||||| || || || || |||| Sbjct 1958402 AGGAGTAATCACGATCGTAGACGATCGCAGAGTTCA 1958367 >seq3658 Length=1447888 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| |||| |||||| | || Sbjct 42699 ATGCAAATCTTCGTGAAGACGCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42640 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||| | || || || ||| Sbjct 42639 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 42580 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | |||||| | ||| | || ||||| Sbjct 42579 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTCTCGGACTATAAT 42520 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||||||||| || || Sbjct 42519 ATCCAGAAGGAGTCCACTCTTCATCTCGTTCT 42488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| |||| || ||| | || Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||| | || || ||||| Sbjct 41180 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 41121 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || ||||| || || ||| | || || ||| || || || ||| Sbjct 41120 CAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAAC 41061 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| || || ||||||||||| || ||| Sbjct 41060 ATCCAAAAGGAGTCAACTCTTCATCTCGTTCTT 41028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| |||| |||||| | || Sbjct 43705 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTCG 43646 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | || || || ||| Sbjct 43645 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 43586 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || |||||||| || || | || || | | | ||| || |||||| || Sbjct 43585 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGA-TGGACGTACTTTGTCCGATTACAA 43527 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || || || |||| || Sbjct 43526 TATCCAAAAGGAATCTACACTCCACTTGGTTCT 43494 >seq3618 Length=512689 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| |||| || ||| | ||| Sbjct 494953 ATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCC 495012 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||||| | || | || ||| Sbjct 495013 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAG 495072 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || |||||||| || || | || || | | | ||| | ||| || || Sbjct 495073 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGA-TGGACGTACTCTTTCCGACTACAA 495131 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || || || || || ||| |||| || |||| Sbjct 495132 CATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACT 495170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745950466400