Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3283 113 9e-20 seq3649 84.2 4e-11 >seq3283 Length=35878 Score = 113 bits (124), Expect = 9e-20 Identities = 192/277 (69%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 35392 AGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGA 35451 |||||||||| | || || |||||||| ||||| ||||||||||| ||||| |||| | Sbjct 10748 AGAGGGAGATCTCGGGCCGGTATACGGTTTCCAGTGGCGTCATTTCGGTGCGAAATACGT 10689 Query 35452 TACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TATACTAAA 35508 ||| | | ||||| || ||||| || | ||||| ||||| | || | | | Sbjct 10688 GGATTGTCATACGGATTACACGGGAAAAGGGGTGGATCAGTTGGCTGAGGTCATTCGACA 10629 Query 35509 GACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGA 35568 || || | | | |||||| | || | || |||||| |||| |||||||| | ||| Sbjct 10628 GATCC---GTCAGGAGCCAGATAGTCGACGTATTATTATGTCGGCGTGGAATCCGACGGA 10572 Query 35569 TCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGG 35628 | | |||| ||| || || || || | || |||||| ||||||| | || Sbjct 10571 TTTGGGAGAAATGGTTCTGCCACCGTGTCATACGATGTGTCAATTCTATGTGGAAAGCGG 10512 Query 35629 AGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGAT 35665 || |||||||| || ||||||||| | || |||||| Sbjct 10511 GGAGTTGTCGTGTCAATTGTATCAGAGGAGTGGAGAT 10475 >seq3649 Length=974952 Score = 84.2 bits (92), Expect = 4e-11 Identities = 131/187 (70%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GC 101907 |||||||||||||| | |||||||| || ||||| ||| || | | | || Sbjct 67426 CATCAAGAAGAAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCGTCGTTCGC 67485 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 |||| | | ||||| || || || |||||||||||||| ||||| | ||||| || Sbjct 67486 CGAACGTCTCATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTC 67545 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 || |||||| ||||||| | || | |||| || | || |||||||||| |||| Sbjct 67546 AATCTTCTGGCTCAAGAAGCGAGGACTCATGCCAGGATTGACACACTCCAATGAGCTCAT 67605 Query 102028 TTCTAGG 102034 || ||| Sbjct 67606 CTCAAGG 67612 Score = 84.2 bits (92), Expect = 4e-11 Identities = 173/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 102112 TCTT-GAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGC 102170 |||| || ||| ||| || |||||| | || |||||||| || | |||| | || | Sbjct 67736 TCTTCGAGATTATCAGGGACGCCGTCTGCATCGAACAAGAGTTCTTGACAGAGGCACTCC 67795 Query 102171 CTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAG 102230 | ||| | | | || |||||||| ||||| || ||||| || || || || | Sbjct 67796 CAGTTGACATGATTGGCATGAACTGTCGTCTGATGTCTCAATACATCGAGTTCGTCGCCG 67855 Query 102231 ATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAACCCCTTCCCAT 102290 || | | | | ||| | ||| || |||| || ||||| | || || ||| | Sbjct 67856 ATCACTTGCTTGCGGAACTCGGATGCGACAAGCTGTACAATGTGAAGAATCCATTCGACT 67915 Query 102291 TCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGT 102350 ||||||| || || || |||| ||||||||||| ||||| ||| | ||| |||||| Sbjct 67916 TCATGGAGAACATCTCGATCGATGGAAAGACCAACTTCTTTGAGAAGCGTGTCTCCGAGT 67975 Query 102351 ATCAACGTGCCCAGG 102365 |||| ||| ||||| Sbjct 67976 ATCAGCGT--CCAGG 67988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989537467904850