Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_003387.1 Length=52797 Score E Sequences producing significant alignments: (Bits) Value seq1401 228 3e-55 seq2028 118 4e-22 >seq1401 Length=3734 Score = 228 bits (252), Expect = 3e-55 Identities = 555/823 (67%), Gaps = 37/823 (4%) Strand=Plus/Minus Query 482 GCGCGAGCTGCTCGTCGCGATGCGCGCCCGCGTGGCGACCGCGGTTGAAGATCCCGA-GA 540 || ||| ||| | |||| ||||| | || | |||| ||| | || | ||||| || Sbjct 1645 GCTCGAACTGATGCTCGCCATGCGGGAGCGGATCGCGAAGGCGATCGAC-AGCCCGAAGA 1587 Query 541 CACCTGCCCGCGATCTGGCTGCCCTGACGCGGCGGCTGTTGGAGATTGCCAACGAGATTG 600 | | ||||| ||||| || || || ||| ||| || ||| || | ||||| | Sbjct 1586 CCCTCGCCCGAGATCTCGCCGCGCTCACGAAGCGTCTCGCGGACATCACGCGGGAGATCG 1527 Query 601 CGGCGATTGACGCTCAGGCCGAGCAGGGCGAGGGCAGCGTCGCCGCCGCGGCAGCGACGC 660 || || | || || ||||||||| ||| ||||| || ||||| || | || | Sbjct 1526 CGTCGCTCGAGGCGCAGGCCGAGGAGGA----GGCAGA--CGATGCCGC--CAAC-ACCC 1476 Query 661 CCGATGAACCATTCGACGGCGACGCTTAGCGAGGTCGC---GCGCCACGTCATTGCGCCG 717 | || ||| | |||| || ||| |||||||| || | ||| | |||| Sbjct 1475 CGGACGAAGACTGGGACGAAGAAGCTATCTGAGGTCGCCAAGCATCTGGTCCT---GCCG 1419 Query 718 CAAGGCATCGTGTCGACGGCCTGGCCGTCGGTGCGCGCGACGTGTGGCGC--GATGGGCC 775 || ||||||||||| | |||||| ||||||| | || ||| ||| ||||||| Sbjct 1418 AGTGGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGG--ACCAGTGCCGCAAGATGGGCG 1361 Query 776 TCGGGTTCGACCTGTGGCAGGACGACCTCGG-CAAGCTGATTTGCGCGAAGCGCGACGAC 834 || | |||| ||||||| | |||||| | || ||| ||| ||||||| | | Sbjct 1360 TCCGTCACGACGAATGGCAGGCAGGCCTCGGGCGCGC-GATGCTCGCCAAGCGCGCCAGC 1302 Query 835 GGCCTGTACGCGGCCGACATGTTCG----CA--ATGTCGATCCCGCGGCAGACCGGCAAG 888 || |||||||| |||| ||| || || || |||||| || ||| ||||||| Sbjct 1301 GGACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAG 1242 Query 889 ACGTACCTGCTCGGCGCGCTCGTGTTCGCGCTGTGCATCAAGACGCCTAACACGACGGTG 948 |||| | |||| || || | ||||| || ||||||| || || ||||| Sbjct 1241 ACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTTCCCGAAGCTCACGGTC 1182 Query 949 ATCTGGACGGCGCACCGGACCCGCACGGCCGCAGAGACTTTCC-GCAGCATGCAGGGCCT 1007 |||||||| ||||||| ||||||| || ||||| ||| | || |||||||| | Sbjct 1181 ATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGC-TGCAGGGCTT 1123 Query 1008 CGC---GAAGCGCGACAAGATCGCCCCGCACATCTTGAACGTGCACACCGGCAACGGCAA 1064 ||| |||||| ||| | |||||||| ||| | | | | | | ||||| | Sbjct 1122 CGCCCAGAAGCGG---AAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCA 1066 Query 1065 AGAGGCCGTGCTGTTTAAGAACGGCTCGCGCATCCTGTTCGGTGCCCGCGAGCGCGGGTT 1124 || | || ||||||||||| || ||| ||||||||||||||||| ||| || Sbjct 1065 GCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTT 1006 Query 1125 CGGCCGTGGGTTCGCCGGTGTCGACGTCCTGATTTTCGACGAGGCGCAGATCCTCACCGA 1184 |||||| || |||||||||||||||||| || | ||| ||||||||||||||| | | Sbjct 1005 CGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAA 946 Query 1185 GAACGCGATGGACGACATGGTGCCCGCGACGAACGCGGCGCCTAACCCGCTGATCCTGCT 1244 || || | || |||||||||||||| || ||||| || |||||||| ||| | || Sbjct 945 CAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCT 886 Query 1245 GGCCGGTACGCCACCGAAGCCGACGGACCCCGGCGAGGTGTTC 1287 | || || || || || ||||||||||| | |||| Sbjct 885 GATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 118 bits (130), Expect = 4e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1096 ATCCTGTTCGGTGCCCGCGAGCGCGGGTTCGGCCGTGGGTTCGCCGGTGTCGACGTCCTG 1155 ||| ||||||| || || ||| |||||||||| ||||| |||| || |||||| || | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1156 ATTTTCGACGAGGCGCAGATCCTCACCGAGAACGCGATGGACGACATGGTGCCCGCGACG 1215 | ||||| |||||||||||||| |||||||| ||| |||| |||||||| | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 1216 AAC 1218 ||| Sbjct 6478 AAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168821442229860