Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3663 185 1e-41 seq3649 84.2 3e-11 >seq3663 Length=2118579 Score = 185 bits (204), Expect = 1e-41 Identities = 326/472 (69%), Gaps = 5/472 (1%) Strand=Plus/Minus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 ||||||| | |||||| |||| | | | || || ||||| || | |||||||||| Sbjct 1960525 CCTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTC 1960466 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || || || | |||||||||| || ||||| || | | | || || | Sbjct 1960465 CAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTG 1960406 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | | || || || ||||| | ||||||| |||||| ||||| ||||| | || |||| Sbjct 1960405 GTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAG 1960346 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 65066 |||| | ||||| |||||| | |||||||| | ||| ||| | ||| |||||| Sbjct 1960345 CCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC-CTTAATG 1960287 Query 65067 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 || |||| | | || | |||||||||||||| | || || | | ||||| Sbjct 1960286 TCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTC 1960227 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || |||||| |||| ||| |||||| ||| | | || | ||| ||||| |||| Sbjct 1960226 ATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATC 1960167 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || || |||||||| | || | |||| || || || ||| || || || | ||| Sbjct 1960166 TGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGAC 1960107 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 1960106 TCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCA 1960055 Score = 172 bits (190), Expect = 7e-38 Identities = 478/725 (66%), Gaps = 16/725 (2%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| |||||||| | || | ||| || ||||| || ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 66041 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 ||| | || | ||||||| || || ||||| |||||||| |||||||| ||||| | Sbjct 1959019 CCAAT-TCTG--ATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAG 1958963 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || || || | | | | || || ||| || ||||| || | |||| | Sbjct 1958962 GAACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTC 1958903 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | || ||| |||||| || || | ||| ||||| | |||| || || |||||||| Sbjct 1958902 GAAAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCC 1958843 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 ||| ||||| | || | ||| |||||||| || || | | |||||| || | || || Sbjct 1958842 TCCTTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTT 1958783 Query 66278 GGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAATATT----ACTAATT 66332 ||||| || || || || | ||| | || || | |||||||| || || ||| Sbjct 1958782 CGATGTTCCGTTAGTTCCAGCGATGACAGAA-CCGGTGGCACGAATCTTGTGGAC--ATT 1958726 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 || | || ||||| || || | || ||||| | || || | || || || || ||| Sbjct 1958725 GA--GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAG 1958668 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 || || || ||| || |||| | || | || || |||||||| |||| Sbjct 1958667 ATTCCAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGG 1958608 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 | ||||| | || || | || |||||||| || || | | || || | ||| Sbjct 1958607 CATGTTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGA 1958548 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 ||||||||||| || || | | || ||| | || ||||| | | |||||||| Sbjct 1958547 TTGTACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATC 1958488 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 ||||| || || || | |||||||| | ||||| ||||| | | |||||| ||| Sbjct 1958487 AACATCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCA 1958428 Query 66633 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 66692 | |||||| || || || ||| |||| || | || || ||||| | || | ||||| Sbjct 1958427 AGAGTTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTC 1958368 Query 66693 AGTTT 66697 || || Sbjct 1958367 AGCTT 1958363 >seq3649 Length=974952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 35882 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 35941 ||||| || || || || || || || || || | || || || |||||||| |||||| Sbjct 67967 ACACGCTTCTCAAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCGAAT 67908 Query 35942 GGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 36001 ||||| | ||||| || | || | |||| | ||| | || ||| ||| ||||| Sbjct 67907 GGATTCTTCACATTGTACAGCTTGTCGCATCCGAGTTCCGCAAGCAAGTGATCGGCGACG 67848 Query 36002 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 36061 || || || ||| ||||| ||| ||||| || || | | |||||| || ||| Sbjct 67847 AACTCGATGTATTGAGACATCAGACGACAGTTCATGCCAATCATGTCAACTGGGAGTGCC 67788 Query 36062 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | || | || |||||||| || |||| ||||| | ||||| Sbjct 67787 TCTGTCAAGAACTCTTGTTCGATGCAGACGGCGTCCCTGATAAT 67744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658142606322800