Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3663 188 1e-42 >seq3663 Length=2118579 Score = 188 bits (208), Expect = 1e-42 Identities = 327/472 (69%), Gaps = 5/472 (1%) Strand=Plus/Minus Query 78707 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 ||||||| | |||||| |||| | | | || || ||||| || | |||||||||| Sbjct 1960525 CCTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTC 1960466 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || || || | ||||||||||||| ||||| || | | | || || | Sbjct 1960465 CAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTG 1960406 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | | || || || ||||| | ||||||| |||||| ||||| ||||| | || |||| Sbjct 1960405 GTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAG 1960346 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 78945 |||| | ||||| |||||| | |||||||| | ||| ||| | ||| |||||| Sbjct 1960345 CCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC-CTTAATG 1960287 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || |||| | | || | |||||||||||||| | || || | | ||||| Sbjct 1960286 TCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTC 1960227 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || || ||| |||| ||| |||||| ||| | | || | ||| ||||| |||| Sbjct 1960226 ATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATC 1960167 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || |||||||| | || | |||| || || || ||| ||||| || | ||| Sbjct 1960166 TGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGAC 1960107 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 ||||| ||||| | |||||||||||| || || |||||||| || |||| || Sbjct 1960106 TCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCA 1960055 Score = 185 bits (204), Expect = 1e-41 Identities = 477/722 (66%), Gaps = 10/722 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| |||||||| || || | ||| || |||||| || ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| | ||| | || || || ||||| |||||||| |||||||| ||||| | || Sbjct 1959019 CCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGAA 1958960 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 | || | | | | ||| || ||| || ||||| || | |||| | | Sbjct 1958959 CAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTCGAA 1958900 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 || ||| | |||||| || || | ||| ||||| | |||| || || ||||||||||| Sbjct 1958899 AACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTCC 1958840 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||||| | || | ||| |||||||| || || | | |||||| || | || || || Sbjct 1958839 TTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCGA 1958780 Query 80160 TGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATT----ACTAATTGAT 80214 ||| || || || || | ||| | || || |||||||||| || || ||||| Sbjct 1958779 TGTTCCGTTAGTTCCAGCGATGACAGAA-CCGGTGGCACGAATCTTGTGGAC--ATTGA- 1958724 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || ||||| || || | || ||||| | || || | || || || || ||||| Sbjct 1958723 -GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAGATT 1958665 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 || || ||| || |||| | || | || || |||||||| |||| | Sbjct 1958664 CCAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCAT 1958605 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | || || | || |||||||| || || | | || |||| |||||| Sbjct 1958604 GTTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGATTG 1958545 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 |||||||| || || | | || ||| | || ||||| | | |||||||| ||| Sbjct 1958544 TACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATCAAC 1958485 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || || || || | |||||||| | || || ||||| | | ||| || ||| | | Sbjct 1958484 ATCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCAAGA 1958425 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 ||||| || || || ||| |||| || | || || ||||| | || | ||||| || Sbjct 1958424 GTTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTCAGC 1958365 Query 80575 TT 80576 || Sbjct 1958364 TT 1958363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718235849418800