Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3649 84.2 2e-11 >seq3649 Length=974952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 214/322 (66%), Gaps = 14/322 (4%) Strand=Plus/Minus Query 13925 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGA 13984 ||| ||||||||||| | |||||| || || | ||| || |||| || || || || Sbjct 67588 TGTCAATCCTGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAACGATCCACT 67529 Query 13985 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14044 ||||| ||||| || || || || || || || | ||||| | ||||| || || || Sbjct 67528 GAAGAAGATTCCTTCGACAGCGGCGAAGGCGATGAGACGTTCGGCGAACGACGCCTTCTT 67469 Query 14045 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 || ||| ||||| || ||||||| || | || || || || || || | ||| Sbjct 67468 GTCCGAGATCCACTTCATAGCCCAGTCGGCCTTCTTCTTGATGAATTCGAACTCGAAAAT 67409 Query 14105 AGCATTAAATA-AATA-----TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 || || || | | || |||||||| | | |||||| || || || || Sbjct 67408 GGCGTTGAACAGAGTAAGGCGCTCCTTCTCATCA------CGAATGTAGGTTTCGATGAG 67355 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 ||||| || ||||| ||||| || || || || || || || || ||| ||| Sbjct 67354 CTTCGAGTACATCTCCGAGTGAATGTTCTCGATGGCGATTTGGAATCCGTAGAAGAATCG 67295 Query 14219 AGCTTCCGAC-CATTGTACTTC 14239 ||| |||||| | ||| ||||| Sbjct 67294 AGCCTCCGACACCTTG-ACTTC 67274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479705992478000