Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3658 82.4 6e-11 >seq3658 Length=1447888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| || |||||||| | ||||||||||||||| |||||| | || || Sbjct 43497 ACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCATCCTCA 43556 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||| || || || || || | || || ||||| | || | ||||| || || | Sbjct 43557 AGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 43616 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | ||| ||||| || || || || | || || || ||| Sbjct 43617 ATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTCTTT 43676 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || ||||| || ||||||||| Sbjct 43677 CCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381352542052860