Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3663 179 5e-40 >seq3663 Length=2118579 Score = 179 bits (198), Expect = 5e-40 Identities = 331/482 (69%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 70790 CCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 ||||||| | ||| ||||||| | | | || | ||||| || | |||||||| | Sbjct 1960525 CCTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTC 1960466 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | || || || || | |||||||||| || ||||| || | | | ||||| | Sbjct 1960465 CAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTG 1960406 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | | || ||||||||||| | || ||| |||||| ||||| ||||| | || |||| Sbjct 1960405 GTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAG 1960346 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 71028 |||| | ||||| |||||| | |||||||| | ||| ||| | ||| |||||| Sbjct 1960345 CCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC-CTTAATG 1960287 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || |||| | | || | |||||||||||||| | || || | | || || Sbjct 1960286 TCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTC 1960227 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || || ||| |||| ||| |||||| ||| | | || | ||| ||||| |||| Sbjct 1960226 ATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATC 1960167 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || |||||||| | || | ||||| || || || ||| || || || | ||| Sbjct 1960166 TGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGAC 1960107 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || ||||| Sbjct 1960106 TCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCAGAAGACTG 1960047 Query 71266 TT 71267 || Sbjct 1960046 TT 1960045 Score = 174 bits (192), Expect = 2e-38 Identities = 463/700 (66%), Gaps = 8/700 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||||||||| |||||||| ||| | || | ||| || ||||| || ||||||| | Sbjct 1959079 TTCGAACTCCTCTCCCCA-GCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAG 1959021 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 |||| | ||| | | || || ||||| |||||||| |||||||| ||||| | | Sbjct 1959020 ACCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGA 1958961 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | | || | | | | ||| || ||| || ||||| || | |||| | | Sbjct 1958960 ACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTCGA 1958901 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 || ||| | |||||| || || | ||| ||||| | |||| || || |||||||||| Sbjct 1958900 AAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTC 1958841 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 | ||||| | || | ||| |||||||| || || | | |||||| || | || || | Sbjct 1958840 CTTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCG 1958781 Query 72242 ATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTGCTAA--TTGATA 72298 ||| || || || || | ||| | || || |||||||||| ||| | |||| Sbjct 1958780 ATGTTCCGTTAGTTCCAGCGATGACAGAA-CCGGTGGCACGAATCTTGTGGACATTGA-- 1958724 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 | || ||||| || || | || ||||| | || || | || || || || ||||| | Sbjct 1958723 GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAGATTC 1958664 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 | || ||| || |||| | || | || || |||||||| |||| | | Sbjct 1958663 CAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCATG 1958604 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| | || || | || |||||||| || || | | || |||| ||||||| Sbjct 1958603 TTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGATTGT 1958544 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||| || || | | || ||| | || ||||| | | |||||||| |||| Sbjct 1958543 ACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATCAACA 1958484 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | || || || | |||||||| | || || ||||| | | |||||| ||| | || Sbjct 1958483 TCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCAAGAG 1958424 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 |||| || || || ||| |||| || | || || ||||| Sbjct 1958423 TTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTA 1958384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671108411489200