Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3649 104 3e-17 >seq3649 Length=974952 Score = 104 bits (114), Expect = 3e-17 Identities = 132/177 (75%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 125013 CATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTC 125072 || || || ||| || | || || ||||| ||||| || ||||| |||||||| ||| Sbjct 67029 CACGAAATCTGGCAATTCTATAAGAAGGCGGTCGCCTCGTTCTGGACAGTCGAAGAAGTC 67088 Query 125073 GATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT 125132 ||||| ||||||| || |||||||||||| | | || || || |||| | || Sbjct 67089 GATCTTGGCAAGGACATGAACGATTGGGAGA--AGATGAACGGAGAC-GAGCAGTACTTC 67145 Query 125133 ATATCGCACA-TTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188 || || || | || | |||||||| |||| |||||||||||| |||||||| ||||| Sbjct 67146 ATCTC-CAGAGTTCTCGCCTTCTTCGCCGCCTCCGATGGAATTGTCAACGAGAATCT 67201 Score = 102 bits (112), Expect = 1e-16 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||||||| || |||||| | |||||||| |||||||| | || || Sbjct 67300 CTTCTACGGATTCCAAATCGCCATCGAGAACATTCACTCGGAGATGTACTCGAAGCTCAT 67359 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACG 125351 || | |||||||| ||| | | | | | | |||| | ||||| || | | Sbjct 67360 CGAAACCTACATTCGTGATGAGAA--GGAGCGCCTTACTCTGTTCAACGCCATTTTCGAG 67417 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | | || || ||||| | |||| || ||||||| ||| | ||| | Sbjct 67418 TTCGAATTCATCAAGAAGAAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCG 67477 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| |||||| | || | || |||||||| || || || |||||||| || Sbjct 67478 TCGTTCGCCGAACGTCTCATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCG 67537 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 || || | ||||| |||||||||||||| ||||||||||| ||| |||| ||| Sbjct 67538 TTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGACTCATGCCAGGATTGACACAC 67591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 || ||||| | || || || ||||| | || || | || || ||| |||||||||| Sbjct 92758 GACGCCGTCTGCATCGAGCAGGAGTTCTTGACAGAGGCACTTCCAGTCGACATGATTGGC 92699 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 |||||||| || |||| | ||||| ||||| || || |||| | || ||| Sbjct 92698 ATGAACTGTCGTCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTTGCTTGCGGAG 92639 Query 125766 TT--GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | ||| || |||| | ||||| | |||||||| || || |||||| | ||| | Sbjct 92638 CTCGGAT--GCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGAGAACATCT 92581 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | |||| || ||||||||||| ||||||||| ||| |||||| Sbjct 92580 CGATAGATGGAAAGACCAACTTCTTCGAGAAGCGTGTCTCCGAGTA 92535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025203909200