Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq210 715 0.0 seq1052 86.0 1e-12 >seq210 Length=3885 Score = 715 bits (792), Expect = 0.0 Identities = 417/431 (97%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 11893 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAAACCTGT 11952 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 11953 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCCGGTCAGACGA 12012 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 12013 AACTGGTGCATGAGGTCTGGCGTCACGCTCTGAATAAAGTCAGCGTGGATAACAAGAATA 12072 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 12073 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCCGAAGTGGGCGGCTTCTGGATGCGTG 12132 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 12133 AGCTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTATCCAACATGGCAGAAAGCT 12192 | |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 12193 ATAAGCCAGAACTGGCTGAAGGCTCCGGACGTGCGCAGACCTGCCGCATGGTTATTATTC 12252 ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 12253 TCAGCAACGTGGCGTCCGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 12312 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 12313 ATTACGTCGAT 12323 ||||||||||| Sbjct 3465 ATTACGTCGAT 3455 >seq1052 Length=3581 Score = 86.0 bits (94), Expect = 1e-12 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 30674 ATGCAACTGCATTAAAACCGACCCATGAAGCGGGCGGGCGAGGCGGGGAAAGCAC 30728 || |||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3525 ATTCAACCGCATTAAAACCGCCCCATGAAGCGGGCGGGCGAGGCGGGGAAAGCAC 3579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98203719972600