Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_004831.2 Length=43769 Score E Sequences producing significant alignments: (Bits) Value seq3663 95.1 3e-15 seq3659 95.1 3e-15 seq3658 95.1 3e-15 seq3656 95.1 3e-15 seq3654 95.1 3e-15 seq3650 95.1 3e-15 seq3638 95.1 3e-15 seq3637 95.1 3e-15 seq3624 95.1 3e-15 seq3613 95.1 3e-15 seq3563 95.1 3e-15 seq3551 95.1 3e-15 seq3542 95.1 3e-15 seq3537 95.1 3e-15 seq3529 95.1 3e-15 seq3437 95.1 3e-15 seq3434 95.1 3e-15 seq3420 95.1 3e-15 seq3406 95.1 3e-15 seq2932 95.1 3e-15 seq2741 95.1 3e-15 seq2725 95.1 3e-15 seq2438 95.1 3e-15 seq1802 95.1 3e-15 seq3131 84.2 6e-12 seq3603 82.4 2e-11 >seq3663 Length=2118579 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2106034 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 2105983 >seq3659 Length=1442895 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157464 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 157413 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440709 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 1440658 >seq3658 Length=1447888 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1371845 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 1371896 >seq3656 Length=1650993 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118357 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 118306 >seq3654 Length=1391273 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1181144 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 1181195 >seq3650 Length=1244161 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893507 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 893558 >seq3638 Length=834164 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2824 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 2875 >seq3637 Length=754322 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206796 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 206745 >seq3624 Length=605935 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510596 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 510545 >seq3613 Length=493530 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339135 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 339186 >seq3563 Length=300087 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42162 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 42213 Score = 87.8 bits (96), Expect = 5e-13 Identities = 52/53 (98%), Gaps = 1/53 (2%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACC-TTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 54339 CGTTAGAACGCGGCTACAATTAATACATAACCTTTATGTATCATACACATACG 54391 >seq3551 Length=321431 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321205 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 321154 >seq3542 Length=304631 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76642 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 76693 >seq3537 Length=256786 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206398 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 206449 >seq3529 Length=270758 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137370 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 137319 >seq3437 Length=113162 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 435 >seq3434 Length=117675 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4548 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 4497 >seq3420 Length=105873 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 373 >seq3406 Length=136462 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58830 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 58881 >seq2932 Length=9486 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9388 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 9337 >seq2741 Length=14701 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 369 >seq2725 Length=14308 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 277 >seq2438 Length=8655 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8295 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 8244 >seq1802 Length=8337 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5059 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 5008 >seq3131 Length=18088 Score = 84.2 bits (92), Expect = 6e-12 Identities = 50/51 (98%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 39860 TTAGAACGCGGCTACAATTAATACATAACC-TTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1630 TTAGAACGCGGCTACAATTAATACATAACCTTTATGTATCATACACATACG 1680 >seq3603 Length=480709 Score = 82.4 bits (90), Expect = 2e-11 Identities = 52/54 (96%), Gaps = 2/54 (4%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAA-TTAATACATAACC-TTATGTATCATACACATACG 39909 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 264 CGTTAGAACGCGGCTACAAATTAATACATAACCCTTATGTATCATACACATACG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139933101274740